Job Description P0AEE5 Confidence 99.97% Date Thu Jan 5 11:23:08 GMT 2012 Rank 63 Aligned Residues 293 % Identity 15% Template c1bdhA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:protein (purine repressor); PDBTitle: purine repressor mutant-hypoxanthine-palindromic operator2 complex Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		N	K	K	V	L	T	L	S	A	V	M	.	.	.	A	S	M	L	F	G	A	A	A	H	A	A	D	T	R	I	G	V	T	I	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	Q	D	A	K	A	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L
Query Conservation													.	.	.
Alig confidence													.	.	.																																											.
Template Conservation																																																										.
Template Sequence		R	N	A	V	W	A	A	I	K	E	L	H	Y	S	P	S	A	V	A	R	S	L	A	V	N	H	T	K	S	I	G	L	L	A	T	S	S	E	A	A	Y	F	A	E	I	I	E	A	V	E	K	N	C	F	Q	K	.	G	Y	T	L	I	L	G	N	A	W	N	N	L	E	K	Q	R	A	Y	L	S	M	M
Template Known Secondary structure													T													T			S							S		S	S	S																	T	.	T									T	T
Template Predicted Secondary structure																																																										.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E	K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	I	I	Q	G	D	L	I	A	K	H	W	A	A	N	Q	G	W	D	L
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.																												.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.																												.	.	.	.	.
Template Sequence		A	Q	K	R	V	D	G	L	L	V	M	C	S	E	Y	P	E	P	L	L	A	M	L	E	E	Y	R	H	I	P	M	V	V	M	D	W	G	E	A	K	A	.	.	.	.	.	.	.	D	F	T	D	A	V	I	D	N	A	F	E	G	G	Y	M	A	G	R	Y	L	I	E	R	G	H	R	.	.	.	.	.
Template Known Secondary structure				T	T		S							S												T	T	T	T	S						S		S	S				.	.	.	.	.	.	.	S	S	S																					T	T			.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.																												.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.								.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	D	G	Q	I	Q	F	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R	T	T	Y	V	I	K	E	L	N	D	K	G	I	K	T	E	Q	L	Q	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A
Query Conservation
Alig confidence		.	.	.	.	.	.																																																											.	.
Template Conservation		.	.	.	.	.	.																																																											.	.
Template Sequence		.	.	.	.	.	.	E	I	G	V	I	P	G	P	L	E	R	N	T	G	A	G	R	L	A	G	F	M	K	A	M	E	E	A	M	I	K	V	P	E	S	W	I	V	Q	G	D	F	E	P	E	S	G	Y	R	A	M	Q	Q	I	L	S	Q	P	.	.	H	R	P	T	A	V	F	C	G	G	D	I	M	A
Template Known Secondary structure		.	.	.	.	.	.	S								T	T	S																	T	T					G	G	G	B					S	S													S	S	S	.	.	S			S					S	S
Template Predicted Secondary structure		.	.	.	.	.	.																																																											.	.
Template SS confidence
								180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.
		239	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V	D	A	L	P	E	A	L	A	L	V	K	S	G	A	L	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	D	G	K	G	A	A	D	G	T	N	W	K	I	D	N	K	V	V	R
Query Conservation													.	.	.
Alig confidence													.	.	.																						.	.	.																														.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.																														.	.	.	.	.	.	.	.
Template Sequence		M	G	A	L	C	A	A	D	E	M	G	L	R	V	P	Q	D	V	S	L	I	G	Y	D	N	V	R	N	A	R	Y	F	T	P	A	.	.	.	L	T	T	I	H	Q	P	K	D	S	L	G	E	T	A	F	N	M	L	L	D	R	I	V	N	K	R	E	E	.	.	.	.	.	.	.	.	P	Q	S	I	E
Template Known Secondary structure											T	T			T	T	T	T										T	T	G	G	G	S	S	S		.	.	.																									T				S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.	.	.																														.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.									.	.	.	.	320
		316	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	Y	V	G	V	D	K	D	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	H	P	R	L	I	E	R	R	S	V
Template Known Secondary structure										S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions