Job Description P31663 Confidence 86.16% Date Thu Jan 5 11:48:25 GMT 2012 Rank 57 Aligned Residues 230 % Identity 16% Template c3jxeB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp Resolution 3.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.
Query SS confidence																																												.	.	.	.	.
Query Sequence		E	T	L	P	L	L	R	Q	Q	I	R	R	L	R	M	E	G	K	R	V	A	L	V	P	T	M	G	N	L	H	D	G	H	M	K	L	V	D	E	A	K	A	.	.	.	.	.	R	A	D	V	V	V	V	S	I	F	V	N	P	M	Q	F	D	R	P	E	D	L	A	R	Y	P	R	T	L	Q	E	D	C
Query Conservation																																												.	.	.	.	.
Alig confidence																											.																	.	.	.	.	.
Template Conservation																											.
Template Sequence		R	D	Y	D	L	I	L	K	D	Y	E	E	G	R	G	F	F	L	Y	T	G	R	G	P	S	.	G	P	M	H	I	G	H	I	I	P	F	F	A	T	K	W	L	Q	E	K	F	G	V	N	L	Y	I	Q	I	T	D	D	E	K	F	L	F	K	E	N	L	T	F	D	D	T	K	R	W	A	Y	D	N	I
Template Known Secondary structure			S										T	T												S	.	S			B																																			S	S
Template Predicted Secondary structure																											.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.						.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure											.	.	.	.	.																																.	.
Query SS confidence											.	.	.	.	.																																.	.
Query Sequence		E	K	L	N	K	R	K	V	D	.	.	.	.	.	L	V	F	A	P	S	V	K	E	I	Y	P	N	G	T	E	T	H	T	Y	V	D	V	P	G	L	S	T	M	L	E	.	.	G	A	S	R	P	G	H	F	R	G	V	S	T	I	V	S	K	L	F	N	L	V	Q	P	D	I	A	C	F	G	E	K	D
Query Conservation											.	.	.	.	.																																.	.
Alig confidence											.	.	.	.	.																																.	.
Template Conservation
Template Sequence		L	D	I	I	A	V	G	F	D	P	D	K	T	F	I	F	Q	N	S	E	F	T	K	I	Y	E	M	A	I	P	I	A	K	K	I	N	F	S	M	A	K	A	V	F	G	F	T	E	Q	S	K	I	G	M	I	F	F	P	A	I	Q	I	A	P	T	F	F	E	R	K	R	C	L	I	P	A	A	I	D	Q
Template Known Secondary structure						T	T				T	T	S						T	T	T	S	T													S													T	T	S													G	G	G	G	S	S	S	S								G	G	G
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.																.		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.																.		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	Q	Q	L	A	L	I	R	K	M	V	A	D	M	G	F	D	I	E	I	V	G	.	.	.	.	V	P	I	M	R	A	K	D	G	L	A	L	S	S	R	.	N	.	.	G	Y	L	T	A	E	Q	R	K	I	A	P	G	L	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.	.																.		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.																.		.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	Y	W	R	L	Q	R	D	F	A	E	S	L	G	Y	Y	K	T	A	A	L	H	S	K	F	V	P	S	L	T	S	L	S	G	K	M	S	A	S	K	P	E	T	A	I	Y	L	T	D	S	P	E	D	V	E	K	K	V	W	K	F	T	L	K	C	V	V	F	K	W	L	E	I	F	F	E	E	D	D
Template Known Secondary structure												T	T	T	T	T	S														S	S		S	S	S				T	T	S	G	G	G			B	T	T												T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
			207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	V	L	S	S	I	A	D	K	L	Q	A	G	E	R	D	L	D	E	I	I	T	I	A	G	Q	E	L	N	E
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		K	K	L	K	E	R	Y	Y	A	C	K	N	G	E	L	T	C	G	E	C	K	R	Y	L	I	S	K	I	Q	E
Template Known Secondary structure													T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions