Job Description P31663 Confidence 31.96% Date Thu Jan 5 11:48:25 GMT 2012 Rank 113 Aligned Residues 211 % Identity 12% Template c3hzrD_ PDB info PDB header:ligase Chain: D: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase homolog from entamoeba histolytica Resolution 3.00 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.																																.	.	.	.
Query SS confidence																																				.	.	.	.																																.	.	.	.
Query Sequence		V	A	L	V	P	T	M	G	N	L	H	D	G	H	M	K	L	V	D	E	A	K	A	R	A	D	V	V	V	V	S	I	F	V	.	.	.	.	N	P	M	Q	F	D	R	P	E	D	L	A	R	Y	P	R	T	L	Q	E	D	C	E	K	L	N	K	R	K	V	D	.	.	.	.	L	V	F	A	P	S	V
Query Conservation																																				.	.	.	.																																.	.	.	.
Alig confidence								.																												.	.	.	.																																.	.	.	.
Template Conservation								.
Template Sequence		I	Q	K	Y	P	Q	.	K	E	V	A	L	E	E	Y	I	T	L	E	F	A	R	Y	L	Q	D	A	F	N	I	Q	V	I	I	Q	I	L	D	D	I	K	V	L	N	R	E	A	T	I	N	E	A	S	K	M	S	N	D	L	M	K	Y	I	L	A	F	G	F	N	E	D	K	T	F	I	Y	T	D	Y	Q
Template Known Secondary structure								.	S	S		B	G	G	G																														T	T	S																				T				G	G	G
Template Predicted Secondary structure								.
Template SS confidence
		82	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
				96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.									.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure		.	.																									.	.																		.	.	.	.	.	.	.	.
Query SS confidence		.	.																									.	.																		.	.	.	.	.	.	.	.
Query Sequence		.	.	K	E	I	Y	P	N	G	T	E	T	H	T	Y	V	D	V	P	G	L	S	T	M	L	E	.	.	G	A	S	R	P	G	H	F	R	G	V	S	T	I	V	S	K	.	.	.	.	.	.	.	.	L	F	N	L	V	Q	P	D	I	A	C	F	G	E	K	D	F	Q	Q	L	A	L	I	R	K	M	V
Query Conservation		.	.																									.	.																		.	.	.	.	.	.	.	.
Alig confidence		.	.																									.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	G	K	M	Y	R	T	I	S	L	V	E	K	A	T	A	Y	N	V	V	Q	P	F	F	N	F	E	Y	S	D	N	I	G	K	L	A	S	P	S	I	M	T	A	S	M	F	S	Q	S	Y	S	H	F	F	S	S	P	A	R	C	L	V	L	D	S	I	K	N	V	Q	F	H	S	I	I	D	Q	I	A
Template Known Secondary structure																							T	T	T	S				S	S	S														T	T	S	G	G	G		T	T	T		S	S										G	G	G
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		164	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.					.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure									.														.						.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.														.						.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	M	G	F	D	I	.	E	I	V	G	V	P	I	M	R	A	K	D	G	.	L	A	L	S	S	.	.	.	.	R	N	G	Y	L	T	A	E	Q	R	K	I	A	P	G	L	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.														.						.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.														.						.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	L	N	F	I	Q	P	T	V	L	F	H	K	M	V	P	L	L	S	G	V	T	K	F	D	I	P	S	D	H	N	S	I	L	L	S	D	N	A	K	Q	V	E	R	K	I	N	K	L	A	F	S	G	G	R	N	T	T	E	E	H	K	K	L	G	G	Q	C	D	I	D	V	S	F	Q	L	L	N	I
Template Known Secondary structure					T															T	T		T	T			S				T	T	T	S		B	T	T													T	S						S	S						T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
								207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	V	L	S	S	I	A	D	K	L	Q	A	G	E	R	D	L	D	E	I	I	T	I	A	G	Q	E	L	N	E
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	S	D	N	A	Q	V	K	D	V	E	E	K	Y	S	K	G	E	L	L	S	G	E	L	K	K	I	V	S	A	S	M	K	D
Template Known Secondary structure				S														T	T		S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions