Job Description P31663 Confidence 89.54% Date Thu Jan 5 11:48:25 GMT 2012 Rank 52 Aligned Residues 212 % Identity 21% Template c3focB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: tryptophanyl-trna synthetase from giardia lamblia Resolution 2.09 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.					.	90	.	.
Predicted Secondary structure																								.	.	.																		.	.																											.	.	.	.					.	.
Query SS confidence																								.	.	.																		.	.																											.	.	.	.					.	.
Query Sequence		V	A	L	V	P	T	M	G	N	L	H	D	G	H	M	K	L	V	D	E	A	K	.	.	.	A	R	A	D	V	V	V	V	S	I	F	V	N	P	M	Q	F	.	.	D	R	P	E	D	L	A	R	Y	P	R	T	L	Q	E	D	C	E	K	L	N	K	R	K	V	D	.	.	.	.	L	V	F	A	.	.
Query Conservation																								.	.	.																		.	.																											.	.	.	.					.	.
Alig confidence																								.	.	.																		.	.																											.	.	.	.					.	.
Template Conservation
Template Sequence		T	G	R	G	P	S	S	G	A	L	H	L	G	H	L	L	P	F	I	F	T	K	Y	L	Q	D	A	F	K	C	Y	V	V	I	Q	I	T	D	D	E	K	F	L	R	N	R	S	L	S	Y	A	E	V	D	S	Y	T	R	E	N	I	K	D	I	I	A	C	G	F	D	P	D	K	T	F	I	F	I	N	S
Template Known Secondary structure								S	S			B																		T																	T	T																			T	T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
				93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																																						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	P	S	V	K	E	I	Y	P	N	G	T	E	T	H	T	Y	V	D	V	P	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	M	L	E	G	A	S	R	P	G	H	F	R	G	V	S	T	I
Query Conservation		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Y	L	S	L	K	N	R	Y	R	F	S	C	L	V	D	R	M	L	P	I	S	Q	L	R	A	S	F	G	F	S	N	D	A	N	V	G	Y	A	A	F	P	P	K	Q	M	L	P	V	Y	S	T	Y	F	D	G	L	P	F	T	R	V	P	L	P	V	G	A	V	L	S	P	V	H	V	V	E	E	L	F
Template Known Secondary structure				T	T	S	T	T											T														S	S							T							G	G	G	S	G	G	G	G	T	T	S	G	G	G		S	B
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.			190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																						.															.	.							.	.		.	.
Query SS confidence																																						.															.	.							.	.		.	.
Query Sequence		V	S	K	L	F	N	L	V	Q	P	D	I	A	C	F	G	E	K	D	F	Q	Q	L	A	L	I	R	K	M	V	A	D	M	G	F	D	.	I	E	I	V	G	V	P	I	M	R	A	K	D	G	.	.	L	A	L	S	S	R	.	.	N	.	.	G	Y	L	T	A	E	Q	R	K	I	A	P	G	L	Y	K
Query Conservation																																						.															.	.							.	.		.	.
Alig confidence																																						.															.	.							.	.		.	.
Template Conservation
Template Sequence		P	D	S	K	R	Y	Q	K	A	M	C	L	I	A	S	G	I	E	Q	D	P	Y	F	R	L	A	R	D	L	A	P	R	M	G	H	P	K	N	A	Y	L	L	G	K	F	L	P	G	L	Q	G	S	G	T	K	M	S	A	S	D	P	N	S	A	I	Y	L	T	D	T	P	A	Q	I	K	N	K	I	N	R
Template Known Secondary structure		G	G	G	T	T	B											T	T	T											T	T	T	T	T	S														T	T		T	T					S	S		G	G	G	S		B	T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		207																																	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	S	I	A	D	K	L	Q	A	G	E	R	D	L	D	E	I	I	T	I	A	G	Q	E	L	N	E
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	A	F	S	G	G	R	D	T	A	F	G	A	D	L	S	V	D	V	S	V	R	Y	L	E	V	F	M	K	D	D	A	E	L	E	K	L	K	A	D	Y	K	T	G	K	L	L	T	G	E	V	K	A	T	L	I	G	I	L	Q	G
Template Known Secondary structure			S				S									T	T	T																											T	S	S
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions