Job Description P31663 Confidence 85.63% Date Thu Jan 5 11:48:25 GMT 2012 Rank 58 Aligned Residues 225 % Identity 16% Template c2ip1A_ PDB info PDB header:ligase Chain: A: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure analysis of s. cerevisiae tryptophanyl trna2 synthetase Resolution 1.80 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																		.	.	.																										.	.													.	.	.
Query SS confidence																		.	.	.																										.	.													.	.	.
Query Sequence		L	L	R	Q	Q	I	R	R	L	R	M	E	G	K	R	V	.	.	.	A	L	V	P	T	M	G	N	L	H	D	G	H	M	K	L	V	D	E	A	K	A	R	A	D	.	.	V	V	V	V	S	I	F	V	N	P	M	Q	.	.	.	F	D	R	P	E	D	L	A	R	Y	P	R	T	L	Q	E	D	C	E
Query Conservation																		.	.	.																										.	.													.	.	.
Alig confidence																		.	.	.																										.	.													.	.	.
Template Conservation
Template Sequence		D	F	T	K	I	L	D	L	Y	E	Q	G	K	P	F	F	L	Y	T	G	R	G	P	S	S	D	S	M	H	L	G	H	M	I	P	F	V	F	T	K	W	L	Q	E	V	F	D	V	P	L	V	I	E	L	T	D	D	E	K	F	L	F	K	H	K	L	T	I	N	D	V	K	N	F	A	R	E	N	A	K
Template Known Secondary structure		S											T													S	S			B	G	G	G															T																	T	T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		81	.	.	.	.	.	.	.					.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure										.	.	.	.								.	.	.																									.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.								.	.	.																									.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	N	K	R	K	V	D	.	.	.	.	L	V	F	A	P	S	V	.	.	.	K	E	I	Y	P	N	G	T	E	T	H	T	Y	V	D	V	P	G	L	S	T	M	L	E	.	.	G	A	S	R	P	G	H	F	R	G	V	S	T	I	V	S	K	L	F	N	L	V	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.	.	.								.	.	.																									.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.								.	.	.																									.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	I	I	A	V	G	F	D	P	K	N	T	F	I	F	S	D	L	Q	Y	M	G	G	A	F	Y	E	T	V	V	R	V	S	R	Q	I	T	G	S	T	A	K	A	V	F	G	F	N	D	S	D	C	I	G	K	F	H	F	A	S	I	Q	I	A	T	A	F	P	S	S	F	P	N	V	L	G	L	P	D	K
Template Known Secondary structure					T	T	T			G	G	G											S												T	S									T	T				T	T	S							T							T	T	S	G	G	G		T	T	T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																															.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	D	I	A	C	F	G	E	K	D	F	Q	Q	L	A	L	I	R	K	M	V	A	D	M	G	F	D	I	.	E	I	V	G	V	P	I	M	R	A	K	D	G	L	A	L	S	S	R	N	G	Y	L	T	A	E	Q	R	K	I	A	P	G	L	Y	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																															.																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.																			.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.
Template Sequence		T	P	C	L	I	P	C	A	I	D	Q	D	P	Y	F	R	V	C	R	D	V	A	D	K	L	K	Y	S	K	P	A	L	L	H	S	R	F	F	P	A	L	Q	G	D	D	T	T	A	.	.	I	F	M	T	D	T	P	K	Q	I	Q	K	K	I	N	K	Y	A	F	S	G	G	Q	V	S	A	D	L	H	R
Template Known Secondary structure										G	G	G															T	S														T	T			G	G	G		.	.		B	T	T														S				S		S	S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
																										208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	S	I	A	D	K	L	Q	A	G	E	R	D	L	D	E	I	I	T	I	A	G	Q	E	L	N	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	G	G	N	P	D	V	D	V	A	Y	Q	Y	L	S	F	F	K	D	D	D	V	F	L	K	E	C	Y	D	K	Y	K	S	G	E	L	L	S	G	E	M	K	K	L	C	I	E	T	L	Q	E
Template Known Secondary structure							T	T	T																											T	S	S
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions