Job Description P31663 Confidence 96.66% Date Thu Jan 5 11:48:25 GMT 2012 Rank 16 Aligned Residues 220 % Identity 15% Template c2cycB_ PDB info PDB header:ligase Chain: B: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: crystal structure of tyrosyl-trna synthetase complexed with l-tyrosine2 from pyrococcus horikoshii Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.		.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.						.	.	.
Predicted Secondary structure																																				.		.								.	.																											.	.	.	.	.
Query SS confidence																																				.		.								.	.																											.	.	.	.	.
Query Sequence		I	E	T	L	P	L	L	R	Q	Q	I	R	R	L	R	M	E	G	K	R	V	A	L	V	P	T	M	G	N	L	H	D	G	H	.	M	.	K	L	V	D	E	A	K	.	.	A	R	A	D	V	V	V	V	S	I	F	V	N	P	M	Q	F	D	R	P	E	D	L	A	R	Y	.	.	.	.	.	P	R	T
Query Conservation																																				.		.								.	.																											.	.	.	.	.
Alig confidence																												.								.		.								.	.											.	.	.	.	.	.	.	.	.	.							.	.	.	.	.
Template Conservation																												.																														.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	T	V	E	N	L	R	H	L	F	E	I	G	A	P	L	Q	H	Y	I	G	F	E	I	S	.	G	Y	I	H	L	G	T	G	L	M	A	G	A	K	I	A	D	F	Q	K	A	G	I	K	T	R	V	F	L	.	.	.	.	.	.	.	.	.	.	A	D	W	H	S	W	I	N	D	K	L	G	G	D
Template Known Secondary structure				T										T	T				B									.	S			B																	T	T		B						.	.	.	.	.	.	.	.	.	.								T	T	G	G	G	G
Template Predicted Secondary structure																												.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.											.	.	.	.	.	.	.	80	.	.	.	.	.	.
		75	.	.	.	.	80													.	.	.	.	.	.	.	.					.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.								.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.								.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.								.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		L	Q	E	D	C	E	.	.	.	.	.	.	.	.	.	.	.	.	K	L	N	K	R	K	V	D	.	.	.	.	L	V	F	A	P	S	V	.	.	.	.	K	E	I	Y	P	N	G	T	E	T	H	T	Y	V	D	V	P	G	L	S	T	M	L	E	G	A	S	R	.	.	.	.	.	.	.	P	G	H	F
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.								.	.	.	.																													.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.								.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	V	I	Q	E	V	A	L	K	Y	F	K	V	G	M	E	K	S	I	E	V	M	G	G	D	P	K	K	V	E	F	V	L	A	S	E	I	L	E	K	G	D	Y	W	Q	T	V	I	D	I	S	K	N	V	T	L	S	R	V	M	R	S	I	T	I	M	G	R	Q	M	G	E	A	I	D	F	A	K	L
Template Known Secondary structure												T												T	T			G	G	G	S					T					T													T	T	S							T	T	G	G	G	G	T					T	T			T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.											.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	V	S	T	I	V	S	K	L	F	N	L	V	Q	P	D	I	A	C	F	G	E	K	D	F	Q	Q	L	A	L	I	R	K	M	V	A	D	M	G	F	.	.	.	.	.	.	.	.	.	.	D	I	E	I	V	G	V	P	I	M	R	A	K	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.																												.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.
Template Sequence		I	Y	P	M	M	Q	V	A	D	I	F	Y	Q	.	G	V	T	I	A	H	A	G	M	D	Q	R	K	A	H	V	I	A	I	E	V	A	Q	K	L	R	Y	H	P	I	V	H	E	G	E	K	L	K	P	V	A	V	H	H	H	L	L	L	G	L	Q	E	P	P	K	W	P	I	E	S	E	E	E	F	K	E
Template Known Secondary structure														T	.	T		S						G	G	G											G	G	G		S	S	S					T	T														B		S	S			S	S	S	S			S
Template Predicted Secondary structure															.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
						184	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.																																													.	.	210	.
Predicted Secondary structure		.	.	.	.								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	L	A	L	S	S	R	N	.	.	.	.	G	Y	L	T	A	E	Q	R	K	I	A	P	G	L	Y	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	S	I
Query Conservation		.	.	.	.								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.								.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	A	Q	M	K	M	S	K	S	K	P	Y	S	A	V	F	I	H	D	S	P	E	E	I	R	Q	K	L	R	K	A	F	C	P	A	R	E	V	R	Y	N	P	V	L	D	W	V	E	Y	I	I	F	R	E	E	P	T	E	F	T	V	H	R	P	A	K	F	G	G	D	V	T	Y	T	T	F	E	E	L
Template Known Secondary structure							B	G	G	G	S		G	G	G	S		B	T	T													S				T	T			S	S										T	T	T	S	S	S	S									G	G	G	T						S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	K	L	Q	A	G	E	R	D	L	D	E	I	I	T	I	A	G	Q	E	L	N	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	D	F	A	E	G	K	L	H	P	L	D	L	K	N	A	V	A	E	Y	L	I	N
Template Known Secondary structure							T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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