Job Description P31663 Confidence 51.98% Date Thu Jan 5 11:48:25 GMT 2012 Rank 82 Aligned Residues 208 % Identity 21% Template c1yi8C_ PDB info PDB header:ligase Chain: C: PDB Molecule:tryptophanyl-trna synthetase; PDBTitle: crystal structure of tryptophanyl trrna synthetase ii from deinococcus2 radiodurans in complex with l-trp Resolution 2.10 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure															.																								.	.	.	.	.																								.	.
Query SS confidence															.																								.	.	.	.	.																								.	.
Query Sequence		A	L	V	P	T	M	G	N	L	H	D	G	H	.	M	K	L	V	D	E	A	K	A	R	A	D	V	V	V	V	S	I	F	V	N	P	M	.	.	.	.	.	Q	F	D	R	P	E	D	L	A	R	Y	P	R	T	L	Q	E	D	C	E	K	L	N	.	.	K	R	K	V	D	L	V	F	A	P	S	V	K
Query Conservation															.																								.	.	.	.	.																								.	.
Alig confidence							.								.																								.	.	.	.	.																								.	.
Template Conservation							.
Template Sequence		G	D	R	P	T	.	G	A	L	H	L	G	H	L	A	G	S	L	Q	N	R	V	R	L	Q	D	E	A	E	L	F	V	L	L	A	D	V	Q	A	L	T	D	H	F	D	R	P	E	Q	V	R	E	N	V	L	A	V	A	L	D	Y	L	A	A	G	L	D	P	Q	K	T	T	C	V	V	Q	S	A	V	P
Template Known Secondary structure						S	.	S			B							T											S																T	T																				T			T	T	T						G	G	G		T
Template Predicted Secondary structure							.
Template SS confidence
		28	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.													.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	I	Y	P	N	G	T	E	T	H	T	Y	V	D	V	P	G	L	S	T	M	L	.	.	.	.	.	.	.	.	.	.	.	.	E	G	A	S	R	P	G	H	F	R	G	V	S	T	I	V	S	K	L	F	N	L	V	Q	P	D	I	A	C	F	G	E	K	D	F	Q	Q	L	A	L	I	R	K	M	V	A
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																																																								.	.
Template Sequence		E	L	A	E	L	T	V	Y	F	L	N	L	V	T	V	S	H	L	R	Q	N	P	T	V	K	A	E	I	A	Q	K	G	Y	G	E	R	V	P	A	G	F	F	V	Y	P	V	S	Q	A	A	D	I	A	A	.	.	F	G	A	T	L	V	P	V	G	D	D	Q	L	P	M	L	E	Q	T	R	E	I	V	R
Template Known Secondary structure												T	T	S																			T		T	T								T												.	.		T		S						T	T	T
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		165	.	.									.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.								.																	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.								.																	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	M	G	.	.	.	.	.	.	.	.	F	D	I	E	I	V	G	.	V	P	I	M	R	A	K	D	G	L	A	L	S	S	R	N	.	.	.	.	G	Y	L	T	A	E	Q	R	K	I	A	P	G	L	Y	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.								.																	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.								.																	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	F	N	A	L	Y	A	P	V	L	A	E	P	Q	A	Q	L	S	R	V	P	R	L	P	G	L	D	G	Q	A	K	M	S	K	S	L	G	N	A	I	A	L	G	D	S	A	D	E	V	A	R	K	V	M	G	M	Y	T	D	P	G	H	L	R	A	S	D	P	G	R	V	E	G	N	P	V	F	T	F	L
Template Known Secondary structure							S		S		S										S	S					T	T	S		S				T	T	T	T				B	T	T												T					T	T			S	T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
											208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	L	S	S	I	A	D	K	L	Q	A	G	E	R	D	L	D	E	I	I	T	I	A	G	Q	E	L	N	E
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	F	D	P	D	P	A	R	V	Q	A	L	K	D	Q	Y	R	A	G	G	L	G	D	V	K	V	K	K	H	L	I	D	V	L	N	G
Template Known Secondary structure						S															S	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions