Job Description P05825 Confidence 98.96% Date Thu Jan 5 10:58:57 GMT 2012 Rank 15 Aligned Residues 349 % Identity 11% Template d1t16a_ SCOP info Transmembrane beta-barrels Porins Outer membrane protein transport protein Resolution 2.60

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		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	I	D	F	L	V	N	Q	T	L	T	L	G	T	E	W	N	Q	Q	R	M	K	D	L	S	S	N	T	Q	A	L	T	G	T	N	T	G	G	A	I	D	G	V	S	T	T	D	R	S	P	Y	S	K	A	E	I	F	S	L	F	A	E	N	N	M	E	L	T	D	S	T	I	V	T	P	G	L	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	M	F	D	R	P	T	F	S	A	G	A	V	Y	I	D	P	D	V	N	I	S	G	T	S	P	S	G	R	S	L	K	A	D	N	I	A	P	T	A	W	V	P	N	M	H	F	V	A	P	I	N	D	Q	F	G	W	G	A	S	I	T	S	N	Y	G	L	A	T	E	F	N	D	T	Y	A	G	G	S
Template Known Secondary structure		G	G	G		S	S																			B		T	T	S		B			B				S															S	S	S											B								T	T		T	T	G	G
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	H	S	I	V	G	N	N	W	S	P	A	L	N	I	S	Q	G	L	G	D	D	F	T	L	K	M	G	I	A	R	A	Y	K	A	P	S	L	Y	Q	T	N	P	N	Y	I	L	Y	S	K	G	Q	G	C	Y	A	S	A	G	G	C	Y	L	Q	G	N	D	D	L	K	A	E	T	S	I	N	K	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	G	T	T	D	L	E	T	M	N	L	N	L	S	G	A	Y	R	L	N	N	A	W	S	F	G	L	G	F	N	A	V	Y	A	R	A	K	I	E	R	F	A	G	D	L	G	Q	L	V	A	G	Q	I	M	Q	S	P	A	G	Q	T	Q	Q	G	Q	A	L	A	A	T	A	N	G	I	D	S	N	T	K
Template Known Secondary structure		G		S																		S	S	S																						S												S	G	G	G	G	S															T	T
Template Predicted Secondary structure
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		535	.	.	.	.																	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.										.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Query Sequence		G	L	E	F	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	G	W	L	A	G	V	T	W	F	R	N	D	Y	R	N	K	I	E	A	G	Y	V	A	V	G	Q	N	.	.	.	.	.	.	.	.	.	A	V	G	T	D	L	Y	Q	W	D	N	V	P	K	A	V	V	E	G	L	E
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	H	L	N	G	N	Q	W	G	F	G	W	N	A	G	I	L	Y	E	L	D	K	N	N	R	Y	A	L	T	Y	R	S	E	V	K	I	D	F	K	G	N	Y	S	S	D	L	N	R	A	F	N	N	Y	G	L	P	I	P	T	A	T	G	G	A	T	Q	S	G	Y	L	T	L	N	L	P	E	M	W	E
Template Known Secondary structure																								T	T																							S		G	G	G	T	T	S			S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.												.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	L	N	V	P	V	S	E	T	V	M	W	T	N	N	I	T	Y	M	L	K	S	E	N	K	.	.	.	.	.	.	.	.	.	.	.	T	T	G	D	R	L	S	I	I	P	E	Y	T	L	N	S	T	L	S	W	Q	A	R	E	D	L	S	M	Q	T	T	F	T	W	Y	G	K	Q	Q	P	K	K	Y
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	G	Y	N	R	V	D	P	Q	W	A	I	H	Y	S	L	A	Y	T	S	W	S	Q	F	Q	Q	L	K	A	T	S	T	S	G	D	T	L	F	Q	K	H	E	G	F	K	D	A	Y	R	I	A	L	G	T	T	Y	Y	Y	D	D	N	W	T	F	R	T	G	I	A	F	D	D	S	P	V	P	A	Q	N
Template Known Secondary structure										T	T												G	G	G									T	T	S																									S	S	S													S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	K	G	Q	P	A	V	G	P	E	T	K	E	I	S	P	Y	S	I	V	G	L	S	A	T	W	D	V	T	K	N	V	S	L	T	G	G	V	D	N	L	F	D	K	R	L	W	R	A	G	N	A	Q	T	T	G	D	L	A	G	A	N	Y	I	A	G	A	G	A	Y	T	Y	N	E	P	G	R	T	W
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	S	I	S	I	P	D	.	.	.	.	.	.	.	.	Q	D	R	F	W	L	S	A	G	T	T	Y	A	F	N	K	D	A	S	V	D	V	G	V	S	Y	M	H	G	Q	S	V	K	I	N	E	G	P	Y	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	E	G	K	A	W	L	F
Template Known Secondary structure				S	S	S			.	.	.	.	.	.	.	.														S	S	S	S																				T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		357	.	.	360	.	.	.									.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.																.	.	.	.	.	410	.	.	.
		739	740	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	S	V	N	T	H	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	N	F	N	Y	A	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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