Job Description P05825 Confidence 4.39% Date Thu Jan 5 10:58:57 GMT 2012 Rank 69 Aligned Residues 123 % Identity 8% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.															.	.	.	.	630	.	.	.	.	.	.	.	.	.					640	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		K	A	V	V	E	G	L	E	G	S	L	N	V	P	V	S	E	T	V	M	W	T	N	N	I	T	Y	M	L	K	S	E	N	K	T	T	G	D	R	L	S	I	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	T	L	N	S	T	L	S	W	Q	A	R	E	.	.	.	.	D	L	S	M
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence															.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation															.	.	.
Template Sequence		E	N	R	T	W	S	G	L	F	S	A	K	Y	.	.	.	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L
Template Known Secondary structure															.	.	.	T	T													S	S					B	T	T				T	T	S	T	T			S	S					S	T	T												T	T	T	T	T		T	T
Template Predicted Secondary structure															.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.					.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		Q	T	T	F	T	W	Y	G	K	Q	Q	P	K	K	Y	N	Y	K	G	Q	P	A	V	G	P	E	T	K	E	I	S	P	Y	S	I	V	G	L	S	A	T	W	D	V	T	.	.	.	.	K	N	V	S	L	T	G	G	V	D	N	L	F	D	K	R	L	W	R	A	G	N	A	Q	T	T	G	D	L	A	G
Query Conservation																																															.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Template Sequence		M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	E	F	D	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T	T			.	.	.	.	.	.	.	.	.	.	.	.	.																	S	S	S	S	T	T													S	S		S					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.														.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	Y	I	A	G	A	G	A	Y	T	Y	N	E	P	G	R	T	W	Y	M	S	V	N	T	H	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	R	L	I	I	S	Y	P	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			408	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions