Job Description P05825 Confidence 4.20% Date Thu Jan 5 10:58:57 GMT 2012 Rank 73 Aligned Residues 125 % Identity 6% Template c2y0kA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	L	N	V	P	V	S	E	T	V	M	W	T	N	N	I	T	Y	M	L	K	S	E	N	K	T	T	G	D	R	L	S	I	I	P	E	Y	T	L	N	S	T	L	S	W	Q	A	R	E	D	L	S	M	Q	T	T	F	T	W	Y	G	K	Q	Q	P	K	K	Y	N	Y	K	G	Q	P	A	V	G	P	E
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template Sequence		A	G	G	D	Y	R	L	T	P	A	L	T	A	S	L	H	Q	G	R	L	K	D	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	T	F	A	G	L	V	H	T	L	D	L	G	R	S	L	K	S	D	L	R	F	A	R	A	S	E	D	G	G	F	R	E	L	D	N	.	.	.	.	.	.
Template Known Secondary structure								S	S	S	S											T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.																														T	T	S						.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.														.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	E	I	S	P	Y	S	I	V	G	L	S	A	T	W	D	V	T	K	N	V	S	L	T	G	G	V	D	N	L	F	D	K	R	L	W	R	A	G	N	A	Q	T	T	G	D	L	A	G	A	N	Y	I	A	G	A	G	A	Y	T	Y	N	E	P	G	R	T	W	Y	M	S	V	N	T	H	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.												.																	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.												.																	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	R	A	F	G	A	L	F	S	L	R	L	.	G	A	H	A	V	A	A	G	Y	Q	R	I	S	G	D	D	.	.	.	.	.	P	Y	P	Y	I	A	G	S	D	P	Y	L	V	N	F	I	Q	I	G	D	F	G	N	V	D	E	R	S	W	Q	L	R	Y	D	Y	D	F
Template Known Secondary structure		.	.	.	.	.	.	.												.	T	T												S	S	S	.	.	.	.	.					B	T	T	S					T	T			S	S					S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.												.																	.	.	.	.	.
Template SS confidence
									241	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.						.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions