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Job DescriptionP05825
Confidence100.00%DateThu Jan 5 10:58:57 GMT 2012
Rank11Aligned Residues636
% Identity15%Templatec1po3A_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:iron(iii) dicitrate transport protein feca PDBTitle: crystal structure of ferric citrate transporter feca in2 complex with ferric citrate
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100 .........110.........120
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Query Sequence  NLQAPGVSTITADEIRKNPVARDVSKIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMG. . . PENTLILIDGKPVSSRNSVR
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Template Conservation 
 
 
 

 

  
 
         
 
   


 
    
 
       
 


          
 


          
Template Sequence  VFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQ
Template Known Secondary structure  GGG
SSSGGGTGGGT

STTSTT


SBTTB
SSSS


TT


GGGTTSTT
SS
TTT
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   97..100.........110.........120.........130.........140.........150.........160.........170......
 
   121........130.........140.........150.........160.........170.........180.........190.........200
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Query Sequence  QGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFS
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Template Sequence  . . . . . . . . PQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNL
Template Known Secondary structure  ........


SS



GGG
S


SSS
SSGGG




SS
TTSS

S
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   177..180.........190.........200.........210.........220.........230.........240........
 
   201........210.........220.........230.........240.........250.........260.........270.........280
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Query Sequence  LTGPLGDEFSFRLYGNLDKTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYSRQGN
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Template Conservation                            ....................                                  
Template Sequence  MVGGTADNGFGTALLYSGTRGSDWRE. . . . . . . . . . . . . . . . . . . . HSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEA
Template Known Secondary structure  TTT

SSS....................S


SSSS
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   249250.........260.........270.... .....280.........290.........300........
 
   281........290.........300.........310.........320.........330.........340.........350.........360
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Query Sequence  LYAGDTQNTNSDSYTRSKYGDETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHTRNSRIPEGLAGGTEGKFNEKATQDFV
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Template Conservation     .                                                                            
Template Sequence  DMP. GGLSRADYDADRWQSTRPYDRFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGKRITLSPRNYWVRGI
Template Known Secondary structure 

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TT

S
SS

SSSS

SS


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   309310. ........320.........330.........340.........350.........360.........370.........380.......
 
   361........370.........380.........390.........400.........410.........420.........430.........440
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Query Sequence  DIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWNQQRMKDLSSNTQALTGTNTGGAIDGVSTTDRSPYSKAEIFSLFAENNM
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Template Conservation                     
                                                            
Template Sequence  EPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIGNWTITPGMR
Template Known Secondary structure  TT
TTSS



SSS
TT
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   388.390.........400.........410.........420.........430.........440.........450.........460.......
 
   441........450.........460.........470.........480.........490.........500.........510.........520
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Query Sequence  ELTDSTIVTPGLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQGCYASAGGCYLQG
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Template Conservation                                                               ...................
Template Sequence  FEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKAVQ. . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT

TT


GGGSS


T...................
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   468.470.........480.........490.........500.........510.........520........
 
   521........530.........540.........550.........560.........570.........580.........590.........600
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Query Sequence  NDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETV
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Template Conservation     
          
              
       
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Template Sequence  SGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARG. . . . KTRHTGLETQARYDLGTLTPTLDNV
Template Known Secondary structure  TSS



SSS





TTTT





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TTSS
GGGTT
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   529530.........540.........550.........560.........570......... 580.........590.........600....
 
   601........610....... ..620.........630.........640.........650.........660.........670.......
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Query Sequence  MWTNNITYMLKSENKTT. . . GDRLSIIPEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYS
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Template Conservation                      
  
   
         
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Template Sequence  SIYASYAYVNAEIREKGDTYGNLVPFSPKHKGTLGVDYK. PGNWTFNLNSDFQSSQFADNANTVKESADGSTGR. IPGFM
Template Known Secondary structure 
SSSTTTT
B
SS

SB
.STT

B
SSTT


S

SSSSSS
.B

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   605....610.........620.........630.........640... ......650.........660.........670....... ..680..
 
   678.680........ .690.........700.........710.........720.........730.........740......
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Query Sequence  IVGLSATWDVT. . . KNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYMSVNTHF
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Template Conservation    

   
          
 
 
 

 
  
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Template Sequence  LWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDNNKG. . . . . . . . . . . . . IYAGQPRTLYMQGSLKF
Template Known Secondary structure  S
TTTT

STT




SSTT
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   683......690.........700.........710.........720.... .....730.........740.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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