Job Description P00904 Confidence 36.78% Date Wed Jan 25 15:20:09 GMT 2012 Rank 366 Aligned Residues 132 % Identity 18% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.							.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Query SS confidence																														.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Query Sequence		A	N	T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	.	.	.	.	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	I	.	.	.	.	.	.	.	.	R	G	E	H	P	N	E	I	.	.	.	.	.	.	A	G	A	A	T	A
Query Conservation																														.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Alig confidence																														.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	A	L	A	N	T	L	K	K	I	A	R	A	S	S	V	D	E	A	L	I	K	E	L	V	R	D	I	Q	R	A	L	I	Q	A	D	V	N	V	R	L	V	L	Q	L	T	R	E	I	Q	R	R	A	L	E	E	K	P	P	A	G	I	S	K	K	E	H	I	I	K	I	V	Y	E	E	L	T	K	F
Template Known Secondary structure																S																					T	T																								T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		L	L	E	N	A	A	P	F	P	R	P	D	Y	L	.	F	A	D	I	V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	G	I	N	L	D	M	N
Query Conservation																.
Alig confidence																.																.	.																						.	.
Template Conservation																																.	.																						.	.
Template Sequence		L	G	T	E	A	K	P	I	E	I	K	E	K	P	T	I	L	L	M	V	G	I	Q	G	S	G	K	T	T	T	.	.	V	A	K	L	A	R	Y	F	Q	K	R	G	Y	K	V	G	V	V	C	S	D	.	.	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E
Template Known Secondary structure		T	T	S	S								S	S	S									T	T	S	S					.	.										T	T	T										.	.		S	S	T											G	G	G	T
Template Predicted Secondary structure																																.	.																						.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions