 |
Job Description | P00904 | Confidence | 90.19% | Date | Wed Jan 25 15:20:09 GMT 2012 |
Rank | 128 | Aligned Residues | 82 |
% Identity | 17% | Template | c2yxbA_ |
PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:coenzyme b12-dependent mutase; |
PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
|
Resolution | 1.80 Å |
|
 |
  |   |
3 | . | . | . | . | |
|
|
|
. | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . |
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | I | L | L | L | . |
. |
. |
. |
D | N | I | D | S | F | T | Y | N | L | A | D | Q | L | R | S | N | G | H | N | V | V | I | Y | R | N | H | I | P | A | Q | T | L | I | E | R | L | A | T | M | S | N | P | V | L | M | L | S | P | G | . |
P | G | V | P | S | E | A | G | C | M | P | E | L | L | T | R | L | R | G | K |
Query Conservation |   |
  |
|
|
|
| . | . | . | . |
|   |   |
|
|
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|
|
| . |
|
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |   |   |   |
|   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
K | V | L | V | A | K | X | G | L | D | G | H | D | R | G | A | K | V | V | A | R | A | L | R | D | A | G | F | E | V | V | Y | T | G | L | R | Q | T | P | E | Q | V | A | X | A | A | V | Q | E | D | V | D | V | I | G | V | S | I | L | N | G | A | H | L | H | L | X | K | R | L | X | A | K | L | R | E | L | G | A | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | S | S | S | S |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
|
|
| S | B |
|
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |  | S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
  |
  |   |
78 | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
L | P | I | I | G | I | C |
Query Conservation |   |
  |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|
|
|
|
Template Sequence |   |
D | I | P | V | V | L | G |
Template Known Secondary structure |   |
T | S |
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
102 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|