Job Description P00904 Confidence 25.94% Date Wed Jan 25 15:20:09 GMT 2012 Rank 414 Aligned Residues 124 % Identity 16% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure																														.	.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.																					.	.	.	.	.	.	.	.
Query Sequence		A	N	T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	.	.	.	.	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	I	.	.	.	.	.	.	.	.	R	G	E	H	P	N	E	I	A	G	A	A	T	A	L	L	E	N	A	A
Query Conservation																														.	.	.	.																					.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.																					.	.	.	.	.	.	.	.									.	.
Template Conservation																																																																						.	.
Template Sequence		G	E	N	L	N	K	A	L	N	K	L	K	A	A	A	F	V	D	K	K	L	I	K	E	V	I	K	D	I	Q	R	A	L	I	Q	A	D	V	N	V	K	L	V	L	K	M	S	K	E	I	E	R	R	A	L	E	E	K	T	P	K	G	L	S	K	K	E	H	.	.	I	I	K	I	V	Y	E	E	L	V
Template Known Secondary structure														S	S	S				S	S	T	T														T											T								S	S	S		S	S		S	S						.	.
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.
												265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	P	F	P	R	P	D	Y	L	F	A	D	I	V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	G
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																							.	.																							.	.
Template Conservation																																		.	.																							.	.
Template Sequence		K	L	L	G	E	E	A	K	K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	.	.	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	.	.	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A
Template Known Secondary structure							S								S	S	S										S	S	S	S	T	T		.	.																						S	.	.				T	T	G	G	G	S	S
Template Predicted Secondary structure																																		.	.																							.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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