Job Description P00904 Confidence 76.24% Date Wed Jan 25 15:20:09 GMT 2012 Rank 224 Aligned Residues 123 % Identity 15% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.							.	.	.	.	.	.	.	260	.
Predicted Secondary structure																											.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Query SS confidence																											.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Query Sequence		L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	.	.	.	.	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	I	.	.	.	.	.	.	.	.	R	G	E	H	P	N	E	I	.	.	.	.	.	.	A	G	A	A	T	A	L	L	E
Query Conservation																											.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Alig confidence																											.	.	.	.																					.	.	.	.	.	.	.	.									.	.	.	.	.	.
Template Conservation
Template Sequence		I	T	S	A	L	R	S	L	S	N	A	T	I	I	N	E	E	V	L	N	A	M	L	K	E	V	C	T	A	L	L	E	A	D	V	N	I	K	L	V	K	Q	L	R	E	N	V	K	S	A	I	D	L	E	E	M	A	S	G	L	N	K	R	K	M	I	Q	H	A	V	F	K	E	L	V	K	L	V	D	P
Template Known Secondary structure		T	T	T	T	T	T				S		S	S																				T	T	T	S	S	S	T	T												T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	A	P	F	P	R	P	D	Y	L	F	A	D	I	V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	G
Query Conservation
Alig confidence																								.														.													.	.
Template Conservation																								.														.													.	.
Template Sequence		G	V	K	A	W	T	P	T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	.	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	.	R	K	G	W	K	T	C	L	I	C	A	D	.	.	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A
Template Known Secondary structure										S	S								S	T	T	S	S	.														.		T	T										.	.		S	S	S
Template Predicted Secondary structure																								.														.													.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions