Job Description P00904 Confidence 38.62% Date Wed Jan 25 15:20:09 GMT 2012 Rank 358 Aligned Residues 127 % Identity 12% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																														.	.	.	.																					.	.	.	.	.	.	.	.								.	.
Query SS confidence																														.	.	.	.																					.	.	.	.	.	.	.	.								.	.
Query Sequence		A	N	T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	.	.	.	.	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	I	.	.	.	.	.	.	.	.	R	G	E	H	P	N	E	.	.	I	A	G	A	A	T	A	L	L	E	N
Query Conservation																														.	.	.	.																					.	.	.	.	.	.	.	.								.	.
Alig confidence																														.	.	.	.																					.	.	.	.	.	.	.	.								.	.
Template Conservation
Template Sequence		T	D	R	L	S	R	T	L	R	N	I	S	G	R	G	R	L	T	E	D	N	V	K	D	T	L	R	E	V	R	M	A	L	L	E	A	D	V	A	L	P	V	V	R	E	F	I	N	R	V	K	E	K	A	V	G	H	E	V	N	K	S	L	T	P	G	Q	E	F	V	K	I	V	R	N	E	L	V	A	A
Template Known Secondary structure		T	T								S	S			S	S	T	T		T																T	S	S																		T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		263	.							.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.
Query Sequence		A	A	.	.	.	.	.	.	P	F	P	R	P	D	Y	L	F	A	D	I	V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	G
Query Conservation				.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.																				.																											.	.
Template Conservation																													.																											.	.
Template Sequence		M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	.	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	.	.	V	Y	R	P	A	A	I	K	Q	L	E	T	L	A
Template Known Secondary structure		T	T		S						S		S	S	S	S								S	S	S	S	S	.	S	T	T	T										T	S	S	S					B					.	.		S	S	S		S
Template Predicted Secondary structure																													.																											.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions