Job Description P00904 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 10 Aligned Residues 309 % Identity 24% Template c2j0fC_ PDB info PDB header:transferase Chain: C: PDB Molecule:thymidine phosphorylase; PDBTitle: structural basis for non-competitive product inhibition in2 human thymidine phosphorylase: implication for drug design Resolution 2.31 Å

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.				270	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	I	R	G	E	H	P	N	E	I	A	G	A	A	T	A	L	L	E	N	A	A	P	F	P	R	P	.	.	.	D	Y	L	F	A	D
Query Conservation																																																																									.	.	.
Alig confidence																																																																									.	.	.
Template Conservation
Template Sequence		Q	L	P	E	L	I	R	M	K	R	D	G	G	R	L	S	E	A	D	I	R	G	F	V	A	A	V	V	N	G	S	A	Q	G	A	Q	I	G	A	M	L	M	A	I	R	L	R	G	M	D	L	E	E	T	S	V	L	T	Q	A	L	A	Q	S	G	Q	Q	L	E	W	P	E	A	W	R	Q	Q	L	V	D
Template Known Secondary structure												T	T																		T		S																															T	T	S							G	G	G	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.
Predicted Secondary structure																																																				.																								.
Query SS confidence																																																				.																								.
Query Sequence		I	V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	.	G	I	N	L	D	M	N	A	D	K	S	R	Q	A	L	D	E	L	G	V	C	F	L	.	F	A	P	K	Y
Query Conservation																																																				.																								.
Alig confidence													.	.	.																																					.																								.
Template Conservation													.	.	.
Template Sequence		K	H	S	T	G	G	V	G	D	K	V	.	.	.	S	L	V	L	A	P	A	L	A	A	C	G	C	K	V	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I	P	G	F	N	V	I	Q	S	P	E	Q	M	Q	V	L	L	D	Q	A	G	C	C	I	V	G	Q	S	E	Q	L
Template Known Secondary structure					S			T	T				.	.	.											T	T		B									B	T	T	B								T	T	S	T	T																	T	S								S	S	S
Template Predicted Secondary structure													.	.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		H	T	G	F	R	H	A	M	P	V	R	Q	Q	L	K	T	R	T	L	F	N	V	L	G	P	L	I	N	P	A	H	P	P	L	A	L	I	G	V	Y	S	P	E	L	V	L	P	I	A	E	T	L	R	V	L	G	Y	Q	R	A	A	V	V	H	S	.	G	G	M	D	E	V	S	L	H	A	P	T	I	V
Query Conservation																																																																			.
Alig confidence																	.	.						.	.							.	.	.	.	.	.	.	.																												.								.	.
Template Conservation																	.	.						.	.							.	.	.	.	.	.	.	.																																				.	.
Template Sequence		V	P	A	D	G	I	L	Y	A	A	R	D	V	T	A	.	.	T	V	D	S	L	.	.	P	L	I	T	A	S	.	.	.	.	.	.	.	.	I	L	S	K	K	L	V	E	G	L	S	A	L	V	V	D	V	K	F	G	A	G	A	V	F	P	N	Q	E	Q	A	R	E	L	A	.	.	K	T	L	V	G
Template Known Secondary structure														T	T	T	.	.		S	S			.	.							.	.	.	.	.	.	.	.								T	T		S									S	T	T	S	S	S		S									.	.
Template Predicted Secondary structure																	.	.						.	.							.	.	.	.	.	.	.	.																																				.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.			.	.	.	.	.	.									.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		A	E	L	H	D	G	E	I	K	S	Y	Q	L	T	A	E	D	F	G	L	T	P	Y	H	Q	E	Q	L	A	G	G	T	P	E	E	N	R	D	I	L	T	R	L	L	Q	G	K	G	D	A	A	H	E	A	A	V	A	A	N	V	A	M	L	M	R	L	H	G	.	H	E	D	L	Q	A	N	A	Q	T	V
Query Conservation																																																																						.
Alig confidence																							.	.	.	.	.	.	.																																									.
Template Conservation																							.	.	.	.	.	.	.
Template Sequence		V	G	A	S	L	G	L	R	V	A	A	A	L	T	A	M	D	K	P	L	G	.	.	.	.	.	.	.	R	C	V	G	H	A	L	E	V	E	E	A	L	L	C	M	D	G	A	G	P	P	D	L	R	D	L	V	T	T	L	G	G	A	L	L	W	L	S	G	H	A	G	T	Q	A	Q	G	A	A	R	V
Template Known Secondary structure						T	T											S	S		S	S	.	.	.	.	.	.	.	S				S												T	T		S																			T	T	S	S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.								.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		L	E	V	L	R	S	G	S	A	Y	D	R	V	T	A	.	L	A	A	R	G
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		A	A	A	L	D	D	G	S	A	L	G	R	F	E	R	M	L	A	A	Q	G
Template Known Secondary structure							S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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