Job Description P00904 Confidence 57.70% Date Wed Jan 25 15:20:09 GMT 2012 Rank 286 Aligned Residues 208 % Identity 17% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.									.	.	.	.	.	.	250	.	.							.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.																				.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query SS confidence																														.	.	.	.																				.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query Sequence		A	N	T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	.	.	.	.	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	.	.	.	.	.	.	.	.	I	R	G	E	H	P	N	E	I	.	.	.	.	.	.	A	G	A	A	T	A
Query Conservation																														.	.	.	.																				.	.	.	.	.	.	.	.										.	.	.	.	.	.
Alig confidence																														.	.	.	.																				.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	R	L	Q	E	A	I	G	R	L	R	G	R	G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A
Template Known Secondary structure												T	T	T	S		S																			T	T	T																				T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.				.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.																											.	.	.	.							.	.	.
Query SS confidence																																								.	.	.																											.	.	.	.							.	.	.
Query Sequence		L	L	E	N	A	A	P	F	P	R	P	D	Y	L	F	A	D	I	V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	.	.	.	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	.	.	.	.	A	A	F	G	I	N	.	.	.
Query Conservation																																								.	.	.																											.	.	.	.							.	.	.
Alig confidence																												.	.	.	.	.								.	.	.															.	.											.	.	.	.							.	.	.
Template Conservation																												.	.	.	.	.																									.	.
Template Sequence		L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	.	.	.	.	.	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	.	.	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E
Template Known Secondary structure		T	T	S	S								S	S									T	T	S	S		.	.	.	.	.														T	T										.	.	S	S																T
Template Predicted Secondary structure																												.	.	.	.	.																									.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.						.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
				329	330	.	.	.	.	.	.	.	.	.							340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure		.	.												.	.	.	.	.	.
Query SS confidence		.	.												.	.	.	.	.	.
Query Sequence		.	.	L	D	M	N	A	D	K	S	R	Q	A	.	.	.	.	.	.	L	D	E	L	G	V	C	F	L	F	A	P	K	Y	H	T	G	F	R	H	A	M	P	V	R	Q	Q	L	K	T	R	T	L	F	N	V	L	G	P	L	I	N	P	A	H	P	P	L	A	L	I	G	V	Y	S	P	E	L	V	L	P
Query Conservation		.	.												.	.	.	.	.	.
Alig confidence		.	.												.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	.	.	.	.	.	.	.	.	.	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V
Template Known Secondary structure				T	T																		T		S										S	S															.	.	.	.	.	.	.	.	.					S								S	S	S		S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.										.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	E	T	L	R	V	L	G	Y	Q	R	A	A	V	V	H	S	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	A	F	D	E	K	V	G	V	T	G	L	V	L	T	K	L	D	G
Template Known Secondary structure									S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions