Job Description P00904 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 7 Aligned Residues 304 % Identity 19% Template c2dsjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase; PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8 Resolution 1.80 Å

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	I	R	G	E	H	P	N	E	I	A	G	A	A	T	A	L	L	E	N	A	A	P	F	P	R	P	D	Y	L	.	F	A	D	I	V
Query Conservation																																																																												.
Alig confidence																																																																												.
Template Conservation
Template Sequence		N	P	V	A	F	I	R	E	K	R	E	G	K	K	H	R	R	E	D	L	E	A	F	L	L	G	Y	L	R	D	E	V	P	D	Y	Q	V	S	A	W	L	M	A	A	F	L	R	G	L	D	P	E	E	T	L	W	L	T	E	T	M	A	R	S	G	K	V	L	D	L	S	G	L	P	H	P	V	D	K	H
Template Known Secondary structure												T	T																	T	T		S																															T	S	S	B					T	T	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.
Predicted Secondary structure																																																		.																								.
Query SS confidence																																																		.																								.
Query Sequence		G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	.	G	I	N	L	D	M	N	A	D	K	S	R	Q	A	L	D	E	L	G	V	C	F	L	.	F	A	P	K	Y	H	T
Query Conservation																																																		.																								.
Alig confidence											.	.	.																																					.																								.
Template Conservation											.	.	.
Template Sequence		S	S	G	G	V	G	D	K	V	.	.	.	S	L	V	V	G	P	I	L	A	A	S	G	C	T	F	A	K	M	S	G	R	G	L	A	H	T	G	G	T	I	D	K	L	E	S	V	P	G	W	R	G	E	M	T	E	A	E	F	L	E	R	A	R	R	V	G	L	V	I	A	A	Q	S	P	D	L	A	P
Template Known Secondary structure				S	S	S			S	T	.	.	.										T	T	T		B									B	T	T	B								T	T	S	T	T																	T	S					S		G	G	G	B	S
Template Predicted Secondary structure											.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		G	F	R	H	A	M	P	V	R	Q	Q	L	K	T	R	T	L	F	N	V	L	G	P	L	I	N	P	A	H	P	P	L	A	L	I	G	V	Y	S	P	E	L	V	L	P	I	A	E	T	L	R	V	L	G	Y	Q	R	A	A	V	V	H	S	.	G	G	M	D	E	V	S	L	H	A	P	T	I	V	A	E
Query Conservation																																																																	.
Alig confidence															.	.						.	.						.	.	.	.	.	.	.	.																													.								.	.
Template Conservation															.	.						.	.						.	.	.	.	.	.	.	.																																					.	.
Template Sequence		L	D	G	K	L	Y	A	L	R	D	V	T	A	.	.	T	V	E	S	V	.	.	P	L	I	A	S	.	.	.	.	.	.	.	.	S	I	M	S	K	K	L	A	A	G	A	R	S	I	V	L	D	V	K	V	G	R	G	A	F	M	K	T	L	E	E	A	R	L	L	A	.	.	K	T	M	V	A	I	G
Template Known Secondary structure												T	T	T	.	.						.	.						.	.	.	.	.	.	.	.										T		S									S	S	S	T	T		B										.	.
Template Predicted Secondary structure															.	.						.	.						.	.	.	.	.	.	.	.																																					.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.			.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	D	G	E	I	K	S	Y	Q	L	T	A	E	D	F	G	L	T	P	Y	H	Q	E	Q	L	A	G	G	T	P	E	E	N	R	D	I	L	T	R	L	L	Q	G	K	G	D	A	A	H	E	A	A	V	A	A	N	V	A	M	L	M	R	L	H	G	H	E	D	L	Q	A	N	A	Q	T	V	L	E	V
Query Conservation
Alig confidence																							.	.	.	.	.	.										.																																	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.										.																																	.	.	.	.	.
Template Sequence		Q	G	A	G	R	R	V	R	A	L	L	T	S	M	E	A	P	L	G	R	A	.	.	.	.	.	.	V	G	N	A	I	E	V	R	E	.	A	I	E	A	L	K	G	E	G	P	G	D	L	L	E	V	A	L	A	L	A	E	E	A	L	R	L	E	G	L	D	P	.	.	.	.	.	A	L	A	R	K	A
Template Known Secondary structure				T	T											S	S		S	S	S		.	.	.	.	.	.			S							.						T	T		S																			T	T			T	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.										.																																	.	.	.	.	.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.							.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.						.	.	.	290	.	.
		515	.	.	.	.	520	.	.	.	.	.	.		.	.	.	530	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		L	R	S	G	S	A	Y	D	R	V	T	A	.	L	A	A	R	G
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		L	E	G	G	A	A	L	E	K	F	R	A	F	L	E	A	Q	G
Template Known Secondary structure				T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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