Job Description P00904 Confidence 66.88% Date Wed Jan 25 15:20:09 GMT 2012 Rank 257 Aligned Residues 126 % Identity 16% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.									.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																															.	.	.	.																			.	.	.	.	.	.	.	.									.	.											.
Query SS confidence																															.	.	.	.																			.	.	.	.	.	.	.	.									.	.											.
Query Sequence		A	N	T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	V	.	.	.	.	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	.	.	.	.	.	.	.	.	I	R	G	E	H	P	N	E	.	.	I	A	G	A	A	T	A	L	L	E	.
Query Conservation																															.	.	.	.																			.	.	.	.	.	.	.	.									.	.											.
Alig confidence																															.	.	.	.																			.	.	.	.	.	.	.	.									.	.											.
Template Conservation
Template Sequence		L	E	N	I	R	D	A	V	R	K	F	L	T	G	S	T	P	Y	E	K	A	V	D	E	F	I	K	D	L	Q	K	S	L	I	S	S	D	V	N	V	K	L	V	F	S	L	T	A	K	I	K	E	R	L	N	K	E	K	P	P	S	V	L	E	R	K	E	W	F	I	S	I	V	Y	D	E	L	S	K	L
Template Known Secondary structure			T	T	T	T	T								S	S	S		S	T																T	S	S																		T	T					S	S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
							262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	N	A	A	P	F	P	R	P	D	Y	L	F	A	D	I	V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	G
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																										.	.																							.	.
Template Conservation																																.	.																							.	.
Template Sequence		F	G	G	D	K	E	P	N	V	N	P	T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	.	.	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	.	.	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G
Template Known Secondary structure		T	T		S						S		S	S	S	S								S	S	S	S	S	S	T	T	.	.	T										T	T	S					B					.	.		S	S	S		S
Template Predicted Secondary structure																																.	.																							.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions