Job Description P00904 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 8 Aligned Residues 310 % Identity 15% Template c1otpA_ PDB info PDB header:phosphorylase Chain: A: PDB Molecule:thymidine phosphorylase; PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270					.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.
Query SS confidence																																																																										.	.	.	.
Query Sequence		T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	I	R	G	E	H	P	N	E	I	A	G	A	A	T	A	L	L	E	N	A	A	P	F	P	R	P	D	.	.	.	.	Y	L	F	A
Query Conservation																																																																										.	.	.	.
Alig confidence																																																																										.	.	.	.
Template Conservation
Template Sequence		L	A	Q	E	I	I	R	K	K	R	D	G	H	A	L	S	D	E	E	I	R	F	F	I	N	G	I	R	D	N	T	I	S	E	G	Q	I	A	A	L	A	M	T	I	F	F	H	D	M	T	M	P	E	R	V	S	L	T	M	A	M	R	D	S	G	T	V	L	D	W	K	S	L	H	L	N	G	P	I	V
Template Known Secondary structure												T	T																	T	T		S																																	S						T	T	T	T		S	S		B	B
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.
Predicted Secondary structure																																																					.																								.
Query SS confidence																																																					.																								.
Query Sequence		D	I	V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	.	G	I	N	L	D	M	N	A	D	K	S	R	Q	A	L	D	E	L	G	V	C	F	L	.	F	A	P	K
Query Conservation																																																					.																								.
Alig confidence														.	.	.																																					.																								.
Template Conservation														.	.	.
Template Sequence		D	K	H	S	T	G	G	V	G	D	V	T	.	.	.	S	L	M	L	G	P	M	V	A	A	C	G	G	Y	I	P	M	I	S	G	R	G	L	G	H	T	G	G	T	L	D	K	L	E	S	I	P	G	F	D	I	F	P	D	D	N	R	F	R	E	I	I	K	D	V	G	V	A	I	I	G	Q	T	S	S
Template Known Secondary structure						S			T	T		T	T	.	.	.										T	T	T		B										S	T	T								T	T	S	T	T			S														T	S								S
Template Predicted Secondary structure														.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	H	T	G	F	R	H	A	M	P	V	R	Q	Q	L	K	T	R	T	L	F	N	V	L	G	P	L	I	N	P	A	H	P	P	L	A	L	I	G	V	Y	S	P	E	L	V	L	P	I	A	E	T	L	R	V	L	G	Y	Q	R	A	A	V	V	H	S	G	G	M	D	E	V	S	L	H	A	P	T	I	V
Query Conservation
Alig confidence																		.	.						.																																																		.	.	.	.	.	.	.
Template Conservation																		.	.						.																																																		.	.	.	.	.	.	.
Template Sequence		L	A	P	A	D	K	R	F	Y	A	T	R	D	I	T	A	.	.	T	V	D	S	I	.	P	L	I	T	A	S	I	L	A	K	K	L	A	E	G	L	D	A	L	V	M	D	V	K	V	G	S	G	A	F	M	P	T	Y	E	L	S	E	A	L	A	E	A	I	V	G	V	A	N	.	.	.	.	.	.	.
Template Known Secondary structure		S		T													T	.	.						.													T	T			S									S	T	T		S	S	S	S																	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.						.																																																		.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure																																																	.																						.
Query SS confidence																																																	.																						.
Query Sequence		A	E	L	H	D	G	E	I	K	S	Y	Q	L	T	A	E	D	F	G	L	T	P	Y	H	Q	E	Q	L	A	G	G	T	P	E	E	N	R	D	I	L	T	R	L	L	Q	G	K	.	G	D	A	A	H	E	A	A	V	A	A	N	V	A	M	L	M	R	L	H	G	.	H	E	D	L	Q	A	N	A	Q	T
Query Conservation																																																	.																						.
Alig confidence		.	.	.																				.	.	.	.	.	.	.																			.																						.
Template Conservation		.	.	.																				.	.	.	.	.	.	.
Template Sequence		.	.	.	G	A	G	V	R	T	T	A	L	L	T	D	M	N	Q	V	L	A	S	.	.	.	.	.	.	.	S	A	G	N	A	V	E	V	R	E	A	V	Q	F	L	T	G	E	Y	R	N	P	R	L	F	D	V	T	M	A	L	C	V	E	M	L	I	S	G	K	L	A	K	D	D	A	E	A	R	A	K
Template Known Secondary structure		.	.	.		T	T											S	S		S	S	S	.	.	.	.	.	.	.				S												T	T	S																					T	T	S		S	S
Template Predicted Secondary structure		.	.	.																				.	.	.	.	.	.	.
Template SS confidence
					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.								.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		V	L	E	V	L	R	S	G	S	A	Y	D	R	V	T	A	L	A	.	A	R	G
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		L	Q	A	V	L	D	N	G	K	A	A	E	V	F	G	R	M	V	A	A	Q	K
Template Known Secondary structure								S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions