Job Description P00904 Confidence 100.00% Date Wed Jan 25 15:20:09 GMT 2012 Rank 9 Aligned Residues 310 % Identity 18% Template c1brwB_ PDB info PDB header:transferase Chain: B: PDB Molecule:protein (pyrimidine nucleoside phosphorylase); PDBTitle: the crystal structure of pyrimidine nucleoside2 phosphorylase in a closed conformation Resolution 2.10 Å

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		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		T	L	Q	P	I	L	E	K	L	Y	Q	A	Q	T	L	S	Q	Q	E	S	H	Q	L	F	S	A	V	V	R	G	E	L	K	P	E	Q	L	A	A	A	L	V	S	M	K	I	R	G	E	H	P	N	E	I	A	G	A	A	T	A	L	L	E	N	A	A	P	F	P	R	P	D	Y	L	.	.	F	A	D	I
Query Conservation																																																																												.	.
Alig confidence																																																																												.	.
Template Conservation
Template Sequence		R	M	V	D	L	I	A	K	K	R	D	G	K	A	L	T	K	E	E	I	E	W	I	V	R	G	Y	T	N	G	D	I	P	D	Y	Q	M	S	A	L	A	M	A	I	Y	F	R	G	M	T	E	E	E	T	A	A	L	T	M	A	M	V	Q	S	G	E	M	L	D	L	S	S	I	R	G	V	K	V	D	K
Template Known Secondary structure												T	T																		T		S																															T	T	S							S	S		S
Template Predicted Secondary structure
Template SS confidence
		1002	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.
Predicted Secondary structure																																																			.																								.
Query SS confidence																																																			.																								.
Query Sequence		V	G	T	G	G	D	G	S	N	S	I	N	I	S	T	A	S	A	F	V	A	A	A	C	G	L	K	V	A	K	H	G	N	R	S	V	S	S	K	S	G	S	S	D	L	L	A	A	F	.	G	I	N	L	D	M	N	A	D	K	S	R	Q	A	L	D	E	L	G	V	C	F	L	.	F	A	P	K	Y	H
Query Conservation																																																			.																								.
Alig confidence												.	.	.																																					.																								.
Template Conservation												.	.	.
Template Sequence		H	S	T	G	G	V	G	D	T	T	.	.	.	T	L	V	L	G	P	L	V	A	S	V	G	V	P	V	A	K	M	S	G	R	G	L	G	H	T	G	G	T	I	D	K	L	E	S	V	P	G	F	H	V	E	I	S	K	D	E	F	I	R	L	V	N	E	N	G	I	A	I	I	G	Q	T	G	D	L	T
Template Known Secondary structure							S	S				.	.	.											T	T											B	T	T	B								T	T	S	T	T																	T	S						S		S	S	S
Template Predicted Secondary structure												.	.	.
Template SS confidence
		1082	.	.	.	.	.	.	.	1090	.				.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	F	R	H	A	M	P	V	R	Q	Q	L	K	T	R	T	L	F	N	V	L	G	P	L	I	N	P	A	H	P	P	L	A	L	I	G	V	Y	S	P	E	L	V	L	P	I	A	E	T	L	R	V	L	G	Y	Q	R	A	A	V	V	H	S	G	G	M	D	E	V	S	L	H	A	P	T	I	V	A	E
Query Conservation
Alig confidence																														.	.	.
Template Conservation																														.	.	.
Template Sequence		P	A	D	K	K	L	Y	A	L	R	D	V	T	A	T	V	N	S	I	P	L	I	A	S	S	I	M	S	.	.	.	K	K	I	A	A	G	A	D	A	I	V	L	D	V	K	T	G	A	G	A	F	M	K	K	L	D	E	A	R	R	L	A	R	V	M	V	D	I	G	K	R	V	G	R	R	T	M	A	V
Template Known Secondary structure													T	T	T															.	.	.						T		S									S	T	T	S	S			S																	T	T	T
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		1159	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.				.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.		.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		L	H	D	G	E	I	K	S	Y	Q	L	T	A	E	D	F	G	L	T	P	Y	H	Q	E	Q	L	A	G	G	T	P	E	E	N	R	D	I	L	T	R	L	L	Q	G	K	G	D	A	A	H	E	A	A	V	A	A	N	V	A	M	L	M	R	L	H	G	H	E	.	D	L	Q	A	N	A	Q	T	V	L	E
Query Conservation																																																																						.
Alig confidence				.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.																																			.
Template Conservation				.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Sequence		I	S	.	.	.	.	.	.	.	.	.	.	D	M	S	Q	P	L	G	Y	A	V	G	N	A	L	E	.	.	.	.	.	.	.	V	K	E	A	I	E	T	L	K	G	N	G	P	H	D	L	T	E	L	C	L	T	L	G	S	H	M	V	Y	L	A	E	K	A	P	S	L	D	E	A	R	R	L	L	E	E
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.			S	S		S	S	S				S				.	.	.	.	.	.	.								T	T	T		S																			T	T	S	S	S	S
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
		1236	.											.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.								.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		V	L	R	S	G	S	A	Y	D	R	V	T	A	L	A	.	A	R	G
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		A	I	R	S	G	A	A	I	A	A	F	K	T	F	L	A	A	Q	G
Template Known Secondary structure					T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		1299	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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