Job Description P0AAQ6 Confidence 7.38% Date Thu Jan 5 11:13:31 GMT 2012 Rank 41 Aligned Residues 61 % Identity 13% Template c3p6yD_ PDB info PDB header:rna binding protein/rna Chain: D: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: cf im25-cf im68-uguaa complex Resolution 2.90 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	K	A	A	P	L	F	K	E	F	G	A	L	R	I	V	E	C	W	A	S	D	V	P	D	G	K	V	T	D	F	R	M	A	V	K	A	E	E	N	E	E	V	V	F	S	W	I	E	Y	P	S	K	E	V	R	D	A	A	N	Q	K	M	M	S	D	P	R	M	K	E	F	G	E	S	M	P	F	D
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	D	L	T	E	A	V	H	S	L	G	V	N	D	I	L	E	I	K	F	F	E	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	A	N	G	Q	S	K	G	F	A	L	V	G	V	S	E	A	S	S	K	K	L	M	.	.	.	.	.	.	.	.	.	.	.	D	L	L	P	K	R	E	L	H
Template Known Secondary structure													T												.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T																					.	.	.	.	.	.	.	.	.	.	.			G	G	G	S		B	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.														.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140												.	.	.	.	.	.	.	.	.
		103	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	R	M	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	N	P	V
Template Known Secondary structure		T	B
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions