Job Description P0AAQ6 Confidence 3.51% Date Thu Jan 5 11:13:31 GMT 2012 Rank 76 Aligned Residues 65 % Identity 17% Template c3ns6B_ PDB info PDB header:translation Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b; PDBTitle: crystal structure of hte rna recognition motif of yeast eif3b residues2 76-170 Resolution 1.25 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	V	A	V	P	A	D	K	K	D	A	Y	R	E	M	A	A	K	A	A	P	L	F	K	E	F	G	A	L	R	I	V	E	C	W	A	S	D	V	P	D	G	K	V	T	D	F	R	M	A	V	K	A	E	E	N	E	E	V	V	F	S	W	I	E	Y	P	S	K	E	V	R	D	A	A	N	Q	K	M
Query Conservation
Alig confidence																																									.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	N	G	A	P	V	I	P	S	A	K	V	P	V	L	K	K	A	L	T	S	L	F	S	K	A	G	K	V	V	N	M	E	F	P	I	D	E	.	A	T	G	K	T	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	F	V	E	C	G	S	M	N	D	A	K	K	I	I	K	S	F
Template Known Secondary structure					S					B	G	G	G														T	T	S											T	.	T	T	T				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S
Template Predicted Secondary structure																																									.								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.															.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions