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Job DescriptionP76655
Confidence100.00%DateThu Jan 5 12:25:14 GMT 2012
Rank2Aligned Residues474
% Identity41%Templatec2vqiA_
PDB info PDB header:transportChain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore
Resolution3.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   157..160.........170.........180.........190.........200..... ....210.........220.........230...
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Query Sequence  AFLDYNLYASHYAPHQGDNSQNISSYGQAGVNLGAWRLRTDYQYDQSFN. . . NGKSQATNLDFPRIYLFRPIPAMNAKLT
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Template Sequence  LXLDYNLNGTVSRNYQGGDSHQFSYNGTVGGNL. PWRLRADYQGSQEQSRYNGEKTTNRNFTWSRFYLFRAIPRWRANLT
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   146...150.........160.........170........ .180.........190.........200.........210.........220....
 
   234.....240.........250.........260.........270.........280.........290.........300.........310...
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Query Sequence  IGQYDTESSIFDSFHFSGISLKSDENMLPPDLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQGQ
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Template Sequence  LGENNINSDIFRSWSYTGASLES. . . XLPPRLRGYAPQITGIAETNARVVVSQQGRVLYDSXVPAGPFSIQDLDSSVRGR
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   226...230.........240........ .250.........260.........270.........280.........290.........300..
 
   314.....320.........330.........340.........350.........360.........370.........380.........390...
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Query Sequence  LDVKVEEEDGRVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNVSLYGGSVLTNRDYQ
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Template Sequence  LDVEVIEQNGRKKTFQVDTASVPYLTRPGQVRYKLVSGRSRG. . . . . YEGPVFATGEASWGLSNQWSLYGGAV. LAGDYN
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   306...310.........320.........330.........340....... ..350.........360.........370... ......
 
   394.....400.........410.........420.........430.........440.........450.........460.........470...
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Query Sequence  SLAAGVGFNLNSLGSLSFDVTRSDAQLHNQDKETGYSYRANYSKRFESTGSQLTFAGYRFSDKNFVTMNEYINDTNHYTN
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Template Sequence  ALAAGAGWDLGVPGTLSADITQSVARIEGERTFQGKSWRLSYSKRF. . . . DDITFAGYRFSERNYXTXEQYLNARYRNDY
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   384.....390.........400.........410.........420......... 430.........440.........450.........
 
   474.....480.........490.........500.........510.........520.........530.........540.........550...
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Query Sequence  YQNEKESYIVTFNQYLESLRLNTYVSLARNTYWDASSNVNYSLSLSRDFDIGPLKNVSTSLTFSRINWEEDNQDQLYLNI
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Template Sequence  SSREKEXYTVTLNKNVADWNTSFNLQYSRQTYWDIRKTDYYTVSVNRYFNVFLQ. GVAVGLSASRSKYLGRDNDSAYLRI
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TTTTSSS

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   464.....470.........480.........490.........500.........510....... ..520.........530.........540..
 
   554.....560.........570.........580.........590.........600.........610.........620.........630...
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Query Sequence  SIPWGTSRTLSYGMQRNQDNEISHTASWYDSSDRNNSWSVSASGDNDEFKDMKASLRASYQHNTENGRLYLSGTSQRDSY
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Template Conservation 
 


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Template Sequence  SVPLG. TGTASYSGSXSNDRYVNXAGYTDTFNDGLDSYSLNAGLNSG. . LTSQRQINAYYSHRSPLANLSANIASLQKGY
Template Known Secondary structure  T.TTTGGGT
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   544.... .550.........560.........570.........580......... 590.........600.........610.........620
 
   634.....640........
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Query Sequence  YSLNASWNGSFTATR
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Template Sequence  TSFGVSASGGATITG
Template Known Secondary structure 


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   623......630.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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