 |
Job Description | P76655 | Confidence | 10.71% | Date | Thu Jan 5 12:25:14 GMT 2012 |
Rank | 99 | Aligned Residues | 109 |
% Identity | 11% | Template | c2vnvC_ |
PDB info |
PDB header:sugar-binding protein | Chain: C: PDB Molecule:bcla; |
PDBTitle: crystal structure of bcla lectin from burkholderia2 cenocepacia in complex with alpha-methyl-mannoside at 1.73 angstrom resolution
|
Resolution | 1.70 Å |
|
 |
  |   |
261 | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | |
|
. | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | |
|
|
. | 330 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| . | . |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
L | P | P | D | L | R | G | Y | A | P | Q | I | T | G | V | A | Q | T | N | A | K | V | T | V | S | Q | N | N | R | I | I | Y | Q | E | N | V | P | P | G | P | F | A | I | T | N | . |
. |
L | F | N | T | L | Q | G | Q | L | D | V | K | V | E | E | E | D | G | R | V | T | Q | W | . |
. |
. |
Q | V | A | S | N | S | I |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |
|   |
|
|
|   |
|
|
|   |   |
|
|   |   |   |
|
|
|
|   |
|   |
|   |
| . | . |
|   |   |   |   |   |
|
|
|   |
|   |
|   |
|   |   |
|   |   |   |   |   | . | . | . |   |
|
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |
| . |
|
|
|
|   |   |
|
|
|   |
|
|
|
|   |
|
|
|
|
|   |   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |
|
|
|
|
|   |
|   | . |
|
|
|
|
|
|   |
|   |
|
|
|
|   |
|   |   |   |
Template Sequence |   |
I | P | P | N | T | D | F | . |
R | A | I | F | F | A | N | A | A | E | Q | Q | H | I | K | L | F | I | G | D | S | Q | E | P | A | A | Y | H | K | L | T | T | R | D | G | P | R | E | A | T | L | N | S | G | N | G | K | I | R | F | E | V | S | . |
V | N | G | K | P | S | A | T | D | A | R | L | A | P | I | N | G | K |
Template Known Secondary structure |   |
|
| T | T |
|  |  | . |  |  |  |  |  |  |
|
| S | S |
|  |  |  |  |  |  |  | T | T |
| S | S |
| S |  |  |  |  |  |
| G | G | G |
|
|  |  |  |  |  |  |
| T | T | S |  |  |  |  |  |  |  | . |  | T | T |  |  |
|  |  |  |  |  |  |
|
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|  | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  | . |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
15 | . | . | . | . | 20 | . | |
. | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | |
. | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
336 | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | Y | L | T | R | K | G | Q | I | R | Y | T | T | A | M | G | K | P | T | S | V | G | G | D | S | L | Q | Q | P | F | F | W | T | G | E | F | S | W | G |
Query Conservation |   |
  |   |
|
|   |   |
|   |   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|   |   |
|
|
|
|
|
| . | . | . |
|
|
|
|
|   |
|
|
|
|   |
|
|
|
|
|
|
|
|
|
Template Sequence |   |
K | S | D | G | S | P | F | T | V | N | F | G | I | V | V | S | . |
. |
. |
E | D | G | H | D | S | D | Y | N | D | G | I | V | V | L | Q | W | P | I | G |
Template Known Secondary structure |   |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |
| S | S | S | S |
|
| B | S |  |  |  |  |  |  |  | S |
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
| . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | |
|
|
. | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|