Job Description P28305 Confidence 100.00% Date Thu Jan 5 11:44:41 GMT 2012 Rank 11 Aligned Residues 258 % Identity 15% Template c2abjG_ PDB info PDB header:transferase Chain: G: PDB Molecule:branched-chain-amino-acid aminotransferase, cytosolic; PDBTitle: crystal structure of human branched chain amino acid transaminase in a2 complex with an inhibitor, c16h10n2o4f3scl, and pyridoxal 5'3 phosphate. Resolution 2.20 Å

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		3	.	.	.	.					.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure							.	.	.	.																												.	.	.	.	.
Query SS confidence							.	.	.	.																												.	.	.	.	.
Query Sequence		L	I	N	G	H	.	.	.	.	K	Q	E	S	L	A	V	S	D	R	A	T	Q	F	G	D	G	C	F	T	T	A	R	V	I	D	G	.	.	.	.	.	K	V	S	L	L	S	A	H	I	Q	R	L	Q	D	A	C	Q	R	L	M	I	S	C	D	F	W	P	Q	L	E	Q	E	M	K	T	L	A	A	E
Query Conservation							.	.	.	.																												.	.	.	.	.
Alig confidence							.	.	.	.																												.	.	.	.	.
Template Conservation
Template Sequence		W	E	K	P	H	I	K	P	L	Q	N	L	S	L	H	P	G	S	S	A	L	H	Y	A	V	E	L	F	E	G	L	K	A	F	R	G	V	D	N	K	I	R	L	F	Q	P	N	L	N	M	D	R	M	Y	R	S	A	V	R	A	T	L	P	V	F	D	K	E	E	L	L	E	C	I	Q	Q	L	V	K	L
Template Known Secondary structure																	T	T						S														T	T	S						S																T
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		74	.	.	.										.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.		.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																																					.													.
Query SS confidence						.	.	.	.	.	.	.	.	.																																																					.													.
Query Sequence		Q	Q	N	G	.	.	.	.	.	.	.	.	.	V	L	K	V	V	I	S	R	G	S	G	G	R	G	Y	S	T	L	N	S	G	P	A	T	R	I	L	S	V	T	A	Y	P	A	H	Y	D	R	L	R	N	E	G	I	T	L	A	L	S	P	V	R	.	L	G	R	N	P	H	L	A	G	I	K	H	.	L
Query Conservation						.	.	.	.	.	.	.	.	.																																																					.													.
Alig confidence						.	.	.	.	.	.	.	.	.																				.	.															.	.	.	.	.	.												.													.
Template Conservation																																		.	.															.	.	.	.	.	.
Template Sequence		D	Q	E	W	V	P	Y	S	T	S	A	S	L	Y	I	R	P	A	F	I	G	T	E	P	S	L	G	V	K	K	P	T	.	.	K	A	L	L	F	V	L	L	S	P	V	G	P	F	.	.	.	.	.	.	N	P	V	S	L	W	A	N	P	K	Y	V	R	A	W	K	G	G	T	G	D	C	K	M	G	G
Template Known Secondary structure		T	G	G	G	S		S	S	T	T															S		S	S	S			S	.	.															.	.	.	.	.	.									T	T			S			T	T	S	S	T	T	S		B	T
Template Predicted Secondary structure																																		.	.															.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.
Predicted Secondary structure																										.																		.	.	.	.	.																															.
Query SS confidence																										.																		.	.	.	.	.																															.
Query Sequence		N	R	L	E	Q	V	L	I	R	S	H	L	E	Q	T	N	A	D	E	A	L	V	L	D	.	S	E	G	W	V	T	E	C	C	A	A	N	L	F	W	R	K	.	.	.	.	.	G	N	V	V	Y	T	P	R	L	D	Q	A	G	V	N	G	I	M	R	Q	F	C	I	R	L	L	A	Q	S	S	.	Y	Q
Query Conservation																										.																		.	.	.	.	.																															.
Alig confidence																										.																		.	.	.	.	.																															.
Template Conservation
Template Sequence		N	Y	G	S	S	L	F	A	Q	C	E	D	V	D	N	G	C	Q	Q	V	L	W	L	Y	G	R	D	H	Q	I	T	E	V	G	T	M	N	L	F	L	Y	W	I	N	E	D	G	E	E	E	L	A	T	P	P	L	D	G	I	I	L	P	G	V	T	R	R	C	I	L	D	L	A	H	Q	W	G	E	F	K
Template Known Secondary structure					T	T										T	T		S							T	T	T	T						T	T										T	T	S										S	S	S	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																						.	.	.	.										.
Query SS confidence																.	.	.	.	.	.																						.	.	.	.										.
Query Sequence		L	V	E	V	Q	A	S	L	E	E	S	L	Q	A	.	.	.	.	.	.	D	E	M	V	I	C	N	A	L	M	P	V	M	P	V	C	A	C	G	D	V	.	.	.	.	S	F	S	S	A	T	L	Y	E	.	Y	L	A	P	L	C	E	R	P
Query Conservation																.	.	.	.	.	.																						.	.	.	.										.
Alig confidence																.	.	.	.	.	.																						.	.	.	.										.
Template Conservation
Template Sequence		V	S	E	R	Y	L	T	M	D	D	L	T	T	A	L	E	G	N	R	V	R	E	M	F	S	S	G	T	A	C	V	V	C	P	V	S	D	I	L	Y	K	G	E	T	I	H	I	P	T	M	E	N	G	P	K	L	A	S	R	I	L	S	K	L
Template Known Secondary structure								B										T	T										T	T	T											T	T						T	T	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions