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Job DescriptionP75785
Confidence99.96%DateThu Jan 5 12:14:07 GMT 2012
Rank16Aligned Residues270
% Identity16%Templatec3q3qA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   212.......220.........230.........240........ .250.........260. ........270.........280..
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Query Sequence  VKPKYQTYVVVIGESARRDALGAFGGHWDNTPFASSV. . NGLIFADYIAASG. . STQKSLGLTLNRVVDGKPQFQ. . . . .
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Template Sequence  AATPPKLIVAISVDQFSADLFSEYRQYY. . TGGLKRLTSEGAVFPRGYQSHAATETCPGHSTILTGSRPSRTGIIANNWF
Template Known Secondary structure  TSS

STT

GGG
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SS

SS

STTS




SS
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   36...40.........50.........60... ......70.........80.........90.........100.........110...
 
   283......290.........300.........310.........320......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLK
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Template Conservation                                       
    
   
  
                              
Template Sequence  DLDAKREDKNLYCAEDESQPGSSSDKYEASPLHLKVPTLGGRMKAANPATRVVSVAGKDRAAIMMGGATADQVWWLGGPQ
Template Known Secondary structure 
TT
SSS

TTB
TTSTT
BTTB

B
STT

S


TT

SS
TT
S
STT
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   114.....120.........130.........140.........150.........160.........170.........180.........190...
 
   327..330....... ..340....
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Query Sequence  EGNFEADKNTK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DEALLDM
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Template Conservation                                                                                  
Template Sequence  GYVSYKGVAPTPLVTQVNQAFAQRLAQPNPGFELPAQCVSKDFPVQAGNRTVGTGRFARDAGDYKGFRISPEQDAMTLAF
Template Known Secondary structure 

STT



TS
B





GGGGGG


TTS




B
TT
SS
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   194.....200.........210.........220.........230.........240.........250.........260.........270...
 
   345....350. ........360.........370.........380.........390.........400.........410.........420
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Query Sequence  TAQVLAQ. . . . EHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYF
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Template Sequence  AAAAIENMQLGKQAQTDIISIGLSATDYVGHTFGTEGTE. . . . . . . . . . SCIQVDRLDTELGAFFDKLDKDGIDYVVVLT
Template Known Secondary structure  TTTTSSSS


SSS..........TT

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   274.....280.........290.........300.........310.. .......320.........330.........340...
 
   421......
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Query Sequence  SDHGLAF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ADHGGHDLPERHRMNAMPMEQRVDMALTPKALNATIAEKAGLPGKKVIWSDGPSGDIYYDKGLTAAQRARVETEALKYLR
Template Known Secondary structure 
S





TTTT
TT


GGGST
TTS

SSSS
TT

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   344.....350.........360.........370.........380.........390.........400.........410.........420...
 
   428.430.........440.........450.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KERGKDVQYLAHDDKYQQNFQVPF
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Template Conservation                                            


      
             
 

         
 
Template Sequence  AHPQVQTVFTKAEIAATPSPSGPPESWSLIQEARASFYPSRSGDLLLLLKPRVMSIPEQAVMGSVATHGSPWDTDRRVPI
Template Known Secondary structure  STTTS



S
GGG

T

TTTS
S
TTSS


SS
S






SS
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   424.....430.........440.........450.........460.........470.........480.........490.........500...
 
   452.......460.........470.........480...... ...490....
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Query Sequence  MVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAK. EINIKYPF
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Template Sequence  LFWRKG. MQHFEQPLGVETVDILPSLAALIKLPVPKDQIDGRCL
Template Known Secondary structure  TT.




S
GGGTT



GGG
S



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   504..... 510.........520.........530.........540......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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