Job Description P75785 Confidence 100.00% Date Thu Jan 5 12:14:07 GMT 2012 Rank 2 Aligned Residues 332 % Identity 13% Template c2w5tA_ PDB info PDB header:transferase Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas. Resolution 1.60 Å

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		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250				.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.			.	.	.
Query SS confidence																																																										.	.			.	.	.
Query Sequence		E	Q	E	R	M	A	K	L	S	G	M	K	D	T	W	T	V	T	A	V	K	P	K	Y	Q	T	Y	V	V	V	I	G	E	S	A	R	R	D	A	L	G	A	F	G	G	H	W	D	N	T	P	F	A	S	S	V	.	.	N	G	.	.	.	L	I	F	A	D	Y	I	A	A	S	G	S	T	Q	K	S	L
Query Conservation																																																										.	.			.	.	.
Alig confidence																																																										.	.			.	.	.
Template Conservation
Template Sequence		T	K	V	L	N	Y	T	K	Q	R	Q	T	E	P	N	P	E	Y	Y	G	V	A	K	K	K	N	I	I	K	I	H	L	E	S	F	Q	T	F	L	I	N	K	K	V	N	G	K	E	V	T	P	F	L	N	K	L	S	S	G	K	E	Q	F	T	Y	F	P	N	F	F	H	Q	T	G	Q	G	K	T	S	D
Template Known Secondary structure								T	S	T	T						T	T	T	T	T	T	T	T	T									T	T			G	G	G	T	T				T	T			S	S								T	T		S	S					T	T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		268			.	270	.	.	.	.	.	.	.	.	.	280	.	.										.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure			.	.															.	.	.	.	.	.	.	.	.								.											.																				.	.
Query SS confidence			.	.															.	.	.	.	.	.	.	.	.								.											.																				.	.
Query Sequence		G	.	.	L	T	L	N	R	V	V	D	G	K	P	Q	F	Q	.	.	.	.	.	.	.	.	.	D	N	F	V	T	L	A	.	N	R	A	G	F	Q	T	W	W	F	.	S	N	Q	G	Q	I	G	E	Y	D	T	A	I	A	S	I	A	K	R	.	.	A	D	E	V	Y	F	L	K	E	G	N	F	E	A
Query Conservation			.	.															.	.	.	.	.	.	.	.	.								.											.																				.	.
Alig confidence			.	.															.	.	.	.	.	.	.	.	.								.											.																				.	.
Template Conservation
Template Sequence		S	E	F	T	M	D	N	S	L	Y	G	L	P	Q	G	S	A	F	S	L	K	G	D	N	T	Y	Q	S	L	P	A	I	L	D	Q	K	Q	G	Y	K	S	D	V	M	H	G	D	Y	K	T	F	W	N	R	D	Q	V	Y	K	H	F	G	I	D	K	F	Y	D	A	T	Y	Y	D	M	S	D	K	N	V	V
Template Known Secondary structure									S					S	S	S						S	T	T	S																						S	S		T	T	G	G	G									T							G	G	G	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		D	K	N	T	K	D	E	A	L	L	D	M	T	A	Q	V	L	A	Q	E	H	S	Q	P	Q	L	I	V	L	H	L	M	G	S	H	P	Q	A	C	D	R	T	Q	G	K	.	.	Y	E	T	F	V	Q	S	K	E	T	S	C	Y	L	Y	T	M	T	Q	T	D	D	L	L	R	K	L	Y	D	Q	L	R	N
Query Conservation																																															.	.
Alig confidence																							.																								.	.
Template Conservation																							.
Template Sequence		N	L	G	L	K	D	K	I	F	F	K	D	S	A	N	Y	Q	A	K	M	K	.	S	P	F	Y	S	H	L	I	T	L	T	N	H	Y	P	F	T	L	D	E	K	D	A	T	I	E	K	S	N	T	G	D	A	T	V	D	G	Y	I	Q	T	A	R	Y	L	D	E	A	L	E	E	Y	I	N	D	L	K	K
Template Known Secondary structure		T	T																	T	S		.	S	S									S	S		T	T					G	G	G			S					S	S
Template Predicted Secondary structure																							.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.		.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
		411	.			.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.					.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure				.	.																								.	.	.	.
Query SS confidence				.	.																								.	.	.	.
Query Sequence		S	G	.	.	S	S	F	S	L	V	Y	F	S	D	H	G	L	A	F	K	E	R	G	K	D	V	Q	.	.	.	.	Y	L	A	H	D	D	K	Y	Q	Q	N	F	Q	V	P	F	M	V	I	S	S	D	D	K	A	H	R	V	I	K	A	R	R	S	A	N	D	F	L	G	F	F	S	Q	W	T	G	I	K
Query Conservation				.	.																								.	.	.	.
Alig confidence				.	.																								.	.	.	.																								.
Template Conservation																																																								.
Template Sequence		K	G	L	Y	D	N	S	V	I	M	I	Y	G	D	H	Y	G	I	S	E	N	H	N	N	A	M	E	K	L	L	G	E	K	I	T	P	A	K	F	T	D	L	N	R	T	G	F	W	I	K	I	P	G	K	.	S	G	G	I	N	N	E	Y	A	G	Q	V	D	V	M	P	T	I	L	H	L	A	G	I	D
Template Known Secondary structure			T		S	T	T	S								S		S	S		G	G	G									T	S										T	T	B								T	T		.											G	G	G										T
Template Predicted Secondary structure																																																								.
Template SS confidence
		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
		485	.	.	.	.	490		.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		A	K	E	I	N	I	.	K	Y	P	F	I	S	E	K	K	A	G	P	I	Y	I	T	N	F	Q	L	Q	K	V	D	Y	N	H	L	G	T	D	I	F	D	P	K
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		T	K	N	Y	L	M	F	G	T	D	L	F	S	K	G	H	N	Q	V	V	P	F	R	N	G	D	F	I	T	K	D	Y	K	Y	V	N	G	K	I	Y	S	N	K
Template Known Secondary structure			T	T	S			S				T	T	S	T	T								T	T	S					S	S					T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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