Job Description P76016 Confidence 99.84% Date Thu Jan 5 12:17:28 GMT 2012 Rank 12 Aligned Residues 257 % Identity 17% Template c1in8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v Resolution 1.90 Å

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		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.				.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		V	S	H	T	F	A	H	M	P	Q	D	D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	.	.	.	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G	D	A	A	L	A	E	E	F
Query Conservation																											.	.	.
Alig confidence																											.	.	.																													.	.	.
Template Conservation																																																										.	.	.
Template Sequence		R	P	K	S	L	D	E	F	I	G	Q	E	N	V	K	K	K	L	S	L	A	L	E	A	A	K	M	R	G	E	V	L	D	H	V	L	L	A	G	P	P	G	L	G	K	T	T	L	A	H	I	I	A	S	E	L	.	.	.	Q	T	N	I	H	V	T	S	G	P	V	L	V	K	Q	G	D	M	A	A	I
Template Known Secondary structure		S		S	S	G	G	G			S																			T										S	S	T	T	S	S													.	.	.	T								T	T	T			S
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	G	D	R	T	D	N	E	N	G	R	L	S	R	L	E	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A	T	T	T	A	D	L	A	M	L	V	E	Q	N	R
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	L	E	R	G	D	V	L	F	I	D	E	I	H	R	L	N	K	A	V	E	E	L	L	Y	S	A	I	E	D	.	.	.	.	.	.	.	F	Q	I	D	I	Q	P	F	T	L	V	G	A	T	V	R	S	G	L	L	S	S	P	L	R	S	R
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.		T			T	T							T	G	G	G																.	.	.	.	.	.	.	S														S		G	G	G	S						T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		97															.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		477	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I	T	I	P	P	L	R	M	R	R	G	S	I	P	A	L	V	N	N	K	L	R	S	L	E	K	R	F	S	T	R	L	K	I	D	D	D	A	L	A	R	L	V	S	C	A	W	P	G	N	D	F	E	L	Y	S	V	I	E	N	L	A	L	S	S	D	.
Query Conservation																																																																																	.
Alig confidence						.	.	.	.	.	.	.	.	.									.	.														.	.	.	.	.	.																	.																					.
Template Conservation						.	.	.	.	.	.	.	.	.									.	.														.	.	.	.	.	.																	.
Template Sequence		F	G	I	I	.	.	.	.	.	.	.	.	.	L	E	L	D	F	Y	T	V	.	.	K	E	L	K	E	I	I	K	R	A	A	S	L	.	.	.	.	.	.	M	D	V	E	I	E	D	A	A	A	E	M	I	A	K	R	.	S	R	G	T	P	R	I	A	I	R	L	T	K	R	V	R	D	M	L	T	V
Template Known Secondary structure			S			.	.	.	.	.	.	.	.	.									.	.														.	.	.	.	.	.	T	T			B											T	.	S	T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.									.	.														.	.	.	.	.	.																	.
Template SS confidence
		171	.	.	.										.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.							.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
				556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.				.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																				.	.	.
Query SS confidence		.	.																																																				.	.	.
Query Sequence		.	.	N	G	R	I	R	V	S	D	L	P	E	H	L	F	T	E	Q	A	T	D	D	V	S	A	T	R	L	S	T	S	L	S	F	A	E	V	E	K	E	A	I	I	N	A	A	Q	V	T	G	G	R	.	.	.	I	Q	E	M	S	A	L	L	G	I	G	R	T	T	L	W	R	K	M	K	Q	H
Query Conservation		.	.																																																				.	.	.
Alig confidence		.	.																							.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	A	D	R	I	N	T	D	I	V	L	K	T	M	E	V	L	N	I	D	D	E	G	.	.	.	.	.	.	.	.	.	.	L	D	E	F	D	R	K	I	L	K	T	I	I	E	I	Y	R	G	G	P	V	G	L	N	A	L	A	A	S	L	G	V	E	A	D	T	L	S	E	V	Y	E	P	Y
Template Known Secondary structure			T		S	S	B													T			T	T		.	.	.	.	.	.	.	.	.	.																S	T	T			B										T	S								T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.											.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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