Job Description P26648 Confidence 23.95% Date Thu Jan 5 11:43:06 GMT 2012 Rank 162 Aligned Residues 57 % Identity 19% Template c3mu3A_ PDB info PDB header:immune system Chain: A: PDB Molecule:protein md-1; PDBTitle: crystal structure of chicken md-1 complexed with lipid iva Resolution 2.40 Å

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		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.																																				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Query Sequence		P	T	I	R	V	W	K	G	D	D	V	K	L	I	Y	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	T	E	N	V	S	M	T	V	A	G	L	Q	V	P	G	.	.	.	.	.	.	P	L	M	G	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		P	T	H	T	V	C	K	E	E	N	L	E	I	Y	Y	K	S	C	D	P	Q	Q	D	F	A	F	S	I	D	R	C	S	D	V	T	T	H	T	F	D	I	R	A	A	M	V	L	R	Q	S	I	K	E	L	Y	A	K	V	D	L	I	I	N	G	K	T	V	L	S	Y	S	E	T	L	C	G	P	G	L	S
Template Known Secondary structure										T	T										T	T								S	S	G	G	G	G	G	S	S											S	S			S	S										T	T												S	T	T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		116	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		P	A	.	.	R	M	M	S	P	N	A	D	W	A	P	V	L	P	I	R
Query Conservation				.	.
Alig confidence				.	.
Template Conservation
Template Sequence		K	L	I	F	C	G	K	K	K	G	E	H	L	Y	Y	E	G	P	I	T
Template Known Secondary structure				T	T	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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