 |
Job Description | P26648 | Confidence | 98.33% | Date | Thu Jan 5 11:43:06 GMT 2012 |
Rank | 106 | Aligned Residues | 77 |
% Identity | 16% | Template | c3ef4A_ |
PDB info |
PDB header:electron transport | Chain: A: PDB Molecule:blue copper protein; |
PDBTitle: crystal structure of native pseudoazurin from2 hyphomicrobium denitrificans
|
Resolution | 1.18 Å |
|
 |
  |   |
77 | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | T | I | R | V | W | K | G | D | D | V | K | L | I | Y | S | N | R | L | T | E | N | V | S | M | T | V | A | G | L | Q | V | P | G | P | L | M | G | G | P | A | R | M | M | S | P | N | A | D | W | A | P | V | L | P | I | R | Q | N | A | A | T | L | W | Y | H | A | N | T | P | N | R | T | A | Q | Q | V | Y | N | G |
Query Conservation |   |
|   |
|
|
|   |   |
|
|   |
|   |
|   |   |   |
|   |
|   |   |   |
|   |
|
|   |
|
|
|   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |
|
|   |
|   |   |
|   |
|   |   |   |   |   |
|
|
|
|
|
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |   |
|
|
|
|   |
|   |
|   |   |   | . | . | . |   |
|   |
|   |   |   |   |   |   |   |
| . | . | . |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
| . | . |   |   |   | . |
|   |
|   |
|   |
|   |   | . | . | . | . | . | . |
|   |   |   |
|
Template Sequence |   |
G | F | V | K | V | E | A | G | D | T | V | K | F | V | P | T | D | K | . |
. |
. |
S | H | N | A | E | S | V | R | E | V | W | P | . |
. |
. |
E | G | V | A | P | V | K | G | G | F | S | K | E | V | V | F | N | A | . |
. |
E | K | E | . |
G | L | Y | V | L | K | C | A | P | . |
. |
. |
. |
. |
. |
H | Y | G | M | G |
Template Known Secondary structure |   |
S |  |  |  |  |
| T | T |
|  |  |  |  |  |
| S | S | S | . | . | . | S |
|
|
|  |  |
| T | T | T | S |
| . | . | . | T | T | S |
|
|
| B |
|
| T | T |
|
|  |  |  |  |
| . | . |
| S | S | . |  |  |  |  |  |  |
| T | T | . | . | . | . | . | . | T | G | G | G | T |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . |
|
|
|  |  |  |  |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  | . | . |
|
|
| . |
|  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
|
|
40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | |
|
70 | . | . | |
. | . | . | . | . | . | . | 80 | . | |
|
|
|
|
|
. | . | . | . | . |
  |
  |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | A | G | M | W | L | V | E | D | E | V | S |
Query Conservation |   |
|   |
|   |
|
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|   |
|
|   |
|   |   |
Template Sequence |   |
M | V | V | L | V | Q | V | G | K | P | V | N |
Template Known Secondary structure |   |
|  |  |  |  |  |  | S | S |
| T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
87 | . | . | 90 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|