Job Description P26648 Confidence 100.00% Date Thu Jan 5 11:43:06 GMT 2012 Rank 25 Aligned Residues 245 % Identity 21% Template c3cdzB_ PDB info PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii light chain; PDBTitle: crystal structure of human factor viii Resolution 3.98 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.										.	.	140	.
Predicted Secondary structure																																													.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	G	P	T	I	R	V	W	K	G	D	D	V	K	L	I	Y	S	N	R	L	T	E	N	V	S	M	T	V	A	G	L	Q	V	P	G	P	L	M	G	G	P	.	.	.	A	R	M	M	S	P	N	A	D	W	A	P	V	L	P	I	R	Q	N	A	A	.	.	.	.	.	.	.	.	.	T	L	W	Y
Query Conservation																																													.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	G	P	Y	I	R	A	E	V	E	D	N	I	M	V	T	F	R	N	Q	A	S	R	P	Y	S	F	Y	S	S	L	I	S	Y	E	E	D	Q	R	Q	G	A	E	P	R	K	N	F	V	K	P	N	E	T	K	T	Y	F	W	K	V	Q	H	H	M	A	P	T	K	D	E	F	D	C	K	A	W	A	Y
Template Known Secondary structure		T	S								S	S											S	S	S		B				B	S						S			S		S	S							B		T	T											T	T	S				T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		1758	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	N	T	P	N	R	T	A	Q	Q	V	Y	N	G	L	A	G	M	W	L	V	E	D	E	V	S	K	S	L	P	I	P	N	H	Y	G	V	D	D	F	P	V	I	I	Q	D	K	R	L	D	N	F	G	T	P	E	Y	N	E	P	G	S	G	G	F	V	G	D	T	L	L	V	N	G	V	Q	S	P	Y
Query Conservation
Alig confidence							.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	D	V	D	.	.	L	E	K	D	V	H	S	G	L	I	G	P	L	L	V	C	H	T	N	T	L	N	P	A	H	G	R	Q	V	T	V	Q	E	F	A	L	F	L	T	I	F	D	E	T	K	S	W	Y	F	T	E	N	M	E	R	N	C	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S	.	.	T	T					T	T										S	S				S	S	S	S			T	T													S	S	S	S	S	T					T	T	S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1838	.	1840	.	.			.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	V	S	R	G	W	V	R	L	R	L	L	N	A	S	N	S	R	R	Y	Q	L	Q	M	N	D	G	R	P	L	H	V	I	S	G	D	Q	G	F	L	P	A	P	V	S	V	K	Q	L	S	L	A	P	G	E	R	R	E	I	L	V	D	M	S	N	G	D	E	V	S	I	T	C	G	E	A	A	S	I
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	R	I	R	G	F	F	E	P	S	S	I	L	V	S	T	L	V	L	T	L	R	P	T	G	L	L	P	L	V	T	D	S	L	P	M	R	L	L	P	T	E	I	M	A	G	S	P	I	R	S	R	D	I	S	L	G	D	D	P	G	I	N	G	Q	L	W	D	V	N	R	I	D	V	T	A	Q	Q	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	C	N	I	Q	M	E	D	P	T	F	K	E	N	Y	R	F	H	A	I	N	G	Y	I	M	D	.	T	L	P	G	L	V	M	A	Q	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					S	S	S	S			S	S	S	S	S				S	S	S			S	S	.			S						S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template SS confidence
																																												1901	.	.	.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.		.	.	1930	.	.	.	.	.	.	.
		382	.	.	.	.	.	.	.	390					.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.
Query SS confidence											.	.	.	.
Query Sequence		T	W	E	R	W	T	V	R	A	.	.	.	.	D	E	P	Q	A	F	H	I	E	G	V	M	F	Q	I	R	N	V	N	G	A	M	P	F	P	E	D	R	G	W	K	D	T	V	W	V	D	G	Q	V	E	L	L	V	Y	F	G	Q	P	S	W	A	H	F	P	F	Y	F	N	S	Q	T	L	E	M	A	D
Query Conservation											.	.	.	.
Alig confidence											.	.	.	.																						.	.	.	.	.	.	.	.																									.	.
Template Conservation																																				.	.	.	.	.	.	.	.																									.	.
Template Sequence		Q	R	I	R	W	Y	L	L	S	M	G	S	N	E	N	I	H	S	I	H	F	S	G	H	V	F	T	V	R	K	K	E	E	Y	.	.	.	.	.	.	.	.	K	M	A	L	Y	N	L	Y	P	G	V	F	E	T	V	E	M	L	P	S	K	A	G	I	.	.	W	R	V	E	C	L	I	G	E	H	L	H
Template Known Secondary structure		S								B		S	S	S	S								T	T							S	S	S			.	.	.	.	.	.	.	.			S						B	T											S				.	.												T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		1938	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.									.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.	.	.	.	.			.	.	.	.	2000	.	.	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	S	I	G	Q	L	L	V	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	M	S	T	L	F	L	V	Y	S
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		2008	.	2010	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions