Phyre 2 alignment of P26648 with c2zooA

Job Description P26648
Confidence 100.00% Date Thu Jan 5 11:43:06 GMT 2012

Rank 22 Aligned Residues 309

% Identity 14% Template c2zooA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125

Resolution 1.95 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.			.	.	.	.	100	.	.	.
Predicted Secondary structure																					.																																																		.	.
Query SS confidence																					.																																																		.	.
Query Sequence	A	A	G	Q	Q	Q	P	L	P	V	P	P	L	L	E	S	R	R	G	Q	.	P	L	F	M	T	V	Q	R	A	H	W	S	F	T	P	G	T	R	A	S	V	W	G	I	N	G	R	Y	L	G	P	T	I	R	V	W	K	G	D	D	V	K	L	I	Y	S	N	R	L	.	.	T	E	N	V	S	M	T	V
Query Conservation																					.																																																		.	.
Alig confidence																					.																																																		.	.
Template Conservation
Template Sequence	A	I	L	T	P	P	P	M	V	P	P	A	I	N	R	D	H	S	A	K	V	V	I	N	L	E	T	R	E	Q	V	G	R	I	A	D	G	V	E	Y	V	F	W	S	F	G	E	T	V	P	G	S	F	I	R	V	R	E	G	D	E	I	E	F	N	L	S	N	H	P	S	S	K	M	P	H	N	I	D	L
Template Known Secondary structure				B		T	T									S	S																			T	T									T	T	B	S	S			B					T	T											T	T		S	S		B
Template Predicted Secondary structure
Template SS confidence
	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.

	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	G	L	Q	V	P	G	P	L	M	G	G	P	A	R	M	M	S	P	N	A	D	W	A	P	V	L	P	I	R	Q	N	A	A	T	L	W	Y	H	A	N	T	P	N	R	T	A	Q	Q	V	Y	N	G	L	A	G	M	W	L	V	E	D	E	V	S	K	S	L	P	I	P	N	H	Y	G	V	D	D	F	P
Query Conservation
Alig confidence							.	.																									.									.																							.	.	.	.	.	.
Template Conservation							.	.																									.									.																							.	.	.	.	.	.
Template Sequence	H	A	V	T	G	P	.	.	G	G	G	A	E	S	S	F	T	A	P	G	H	T	S	T	F	N	F	K	A	L	N	P	.	G	L	Y	I	Y	H	C	A	.	T	A	P	V	G	M	H	I	A	N	G	M	Y	G	L	I	L	V	E	P	K	E	.	.	.	.	.	.	G	L	A	P	V	D	R	E	Y	Y
Template Known Secondary structure	T	T			S	G	.	.	G	G	G	G	G	G			B		T	T											S		.									.		S	S							T	T										T	T	.	.	.	.	.	.						S
Template Predicted Secondary structure							.	.																									.									.																							.	.	.	.	.	.
Template SS confidence
	89	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.							.	150	.	.	.	.	.	.	.	.

	184	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure														.	.	.	.																										.	.	.	.	.								.
Query SS confidence														.	.	.	.																										.	.	.	.	.								.
Query Sequence	V	I	I	Q	D	K	R	L	D	N	F	G	T	.	.	.	.	P	E	Y	N	E	P	G	S	G	G	F	V	G	D	T	L	L	V	N	G	V	Q	S	P	Y	.	.	.	.	.	V	E	V	S	R	G	W	.	V	R	L	R	L	L	N	A	S	N	S	R	R	Y	Q	L	Q	M	N	D	G	R	P	L	H
Query Conservation														.	.	.	.																										.	.	.	.	.								.
Alig confidence														.	.	.	.																										.	.	.	.	.								.																				.
Template Conservation																																																																											.
Template Sequence	L	V	Q	G	D	F	Y	T	K	G	E	F	G	E	A	G	L	Q	P	F	D	M	A	K	A	I	D	E	D	A	D	Y	V	V	F	N	G	S	V	G	S	T	T	D	E	N	S	L	T	A	K	V	G	E	T	V	R	L	Y	I	G	N	G	G	P	N	L	V	S	S	F	H	V	I	.	G	E	I	F	D
Template Known Secondary structure								B	S	S		T	T							B							T	T			S					T	T	S	T	T	T	T	S	G	G	G						T	T												S	S									.	T			B	S
Template Predicted Secondary structure																																																																											.
Template SS confidence
	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.

	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.					.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence	V	I	S	G	D	Q	G	F	L	P	A	P	V	S	V	K	Q	L	S	L	A	P	G	E	R	R	E	I	L	V	D	M	S	N	G	D	E	V	S	I	T	C	G	E	A	.	.	.	.	A	S	I	V	D	R	I	R	G	F	F	E	P	S	S	I	L	V	S	T	L	V	L	T	L	R	P	T	G	L	L
Query Conservation																																														.	.	.	.
Alig confidence											.																																			.	.	.	.
Template Conservation											.
Template Sequence	T	V	Y	V	E	G	G	S	L	K	.	N	H	N	V	Q	T	T	L	I	P	A	G	G	A	A	I	V	E	F	K	V	E	V	P	G	T	F	I	L	V	D	H	S	I	F	R	A	F	N	K	G	A	L	A	M	L	K	V	E	G	P	D	D	H	S	I	F	T	G	K	T	A	E	N	V	Y	L	P	E
Template Known Secondary structure				G	G	G	S	S			.			S	B	S						T	T											S									S	S	T					T	T	S									S				T	T	T							S		S	S
Template Predicted Secondary structure											.
Template SS confidence
	238	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.

	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	L	V	T	D	S	L	P	M	R	L	L	P	T	E	I	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	S	A	I	Q	S	L	D	N	T	F	T	K	I	T	A	N	N
Template Known Secondary structure		S																S
Template Predicted Secondary structure
Template SS confidence
	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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