Job Description P26648 Confidence 23.23% Date Thu Jan 5 11:43:06 GMT 2012 Rank 165 Aligned Residues 99 % Identity 14% Template c2xwxB_ PDB info PDB header:chitin-binding protein Chain: B: PDB Molecule:glcnac-binding protein a; PDBTitle: vibrio cholerae colonization factor gbpa crystal structure Resolution 1.80 Å

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		116	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure											.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	A	R	M	M	S	P	N	A	.	D	W	A	P	V	L	P	I	R	Q	N	A	A	T	L	W	Y	H	A	N	T	P	N	R	T	A	Q	Q	V	Y	N	G	L	A	G	M	W	L	V	E	D	E	V	S	K	S	L	P	I	P	N	H	Y	G	V	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation											.																																																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.												.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		V	K	R	P	I	Q	A	G	P	Q	T	F	E	W	T	F	T	A	N	H	V	.	T	K	D	W	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	I	T	K	P	N	W	N	P	N	Q	.	.	P	L	S	R	D	A	F	D	L	N	P	F	C	V	V	E	G	N	M	V	Q
Template Known Secondary structure								S										S	S				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B		T	T			T	T	S	.	.				G	G	G	B		S	S		S
Template Predicted Secondary structure																							.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.																			.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
																		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	V	I	I	Q	D	K	R	L	D	N	F	G	T	P	E	Y	N	E	P	G	S	G	G	F	V	G	D	T	L	L	V	N	G	V	Q	S	P	Y	V	E	V	S	R	G	.	W	V	R	L	R	L	L	N	A	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.																						.
Template Conservation																																									.	.
Template Sequence		P	P	K	R	V	S	H	E	C	I	V	P	E	R	E	G	Y	Q	V	I	L	A	V	W	D	V	G	D	T	A	A	S	F	Y	N	V	I	D	V	.	.	K	F	D	P	D	W	N	P	A	G	Q	I	I	P	S	M	D	L	S	I	G	D	T	V	Y	T	R	V	F	D	N	D
Template Known Secondary structure				S																								T	T	S	S										.	.																S				T	T										T	T
Template Predicted Secondary structure																																									.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions