Job Description P26648 Confidence 100.00% Date Thu Jan 5 11:43:06 GMT 2012 Rank 30 Aligned Residues 214 % Identity 24% Template c1sddB_ PDB info PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai Resolution 2.80 Å

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		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.										.	.	140	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	G	P	T	I	R	V	W	K	G	D	D	V	K	L	I	Y	S	N	R	L	T	E	N	V	S	M	T	V	A	G	L	Q	V	P	G	P	L	M	G	G	P	A	R	M	M	S	P	N	A	D	W	A	P	V	L	P	I	R	Q	N	A	A	.	.	.	.	.	.	.	.	.	T	L	W	Y	H	A	N
Query Conservation																																																																		.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	G	P	V	I	R	A	E	V	D	D	V	I	Q	V	R	F	K	N	L	A	S	R	P	Y	S	L	H	A	H	G	L	.	.	.	.	.	.	.	.	.	.	S	N	A	I	Q	P	N	K	T	Y	T	Y	V	W	H	A	T	T	R	S	G	P	E	N	P	G	S	A	C	R	A	W	A	Y	Y	S	A
Template Known Secondary structure		T	S								T	T											S	S	S		B						T		.	.	.	.	.	.	.	.	.	.				B		T	T											T	T	T	S			S	S	S		S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1602	.	.	.	.	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.											.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.	.	.	.	1670	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		T	P	N	R	T	A	Q	Q	V	Y	N	G	L	A	G	M	W	L	V	E	D	E	V	S	K	S	L	P	I	P	N	H	Y	G	V	D	D	F	P	V	I	I	Q	D	K	R	L	D	N	F	G	T	P	E	Y	N	E	P	G	S	G	G	F	V	G	D	T	L	L	V	N	G	V	Q	.	.	S	P	Y	V
Query Conservation																																																																												.	.
Alig confidence				.	.																																										.	.	.	.	.	.	.	.																						.	.
Template Conservation				.	.																																										.	.	.	.	.	.	.	.
Template Sequence		V	N	.	.	P	E	K	D	I	H	S	G	L	I	G	P	L	L	I	C	R	K	G	T	L	D	K	E	T	N	M	P	V	D	M	R	E	F	V	L	L	F	M	V	F	.	.	.	.	.	.	.	.	D	E	K	K	S	W	Y	Y	D	N	S	H	E	F	H	A	I	N	G	M	I	Y	N	L	P	G	L
Template Known Secondary structure		S	S	.	.						T	T	T										T	T	S	S		T	T	S				S	S												.	.	.	.	.	.	.	.		G	G	G	S	S												T	T	B	S	S
Template Predicted Secondary structure				.	.																																										.	.	.	.	.	.	.	.
Template SS confidence
		1693	.			.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.									.	.	.	.	1740	.	.	.	.	.	.	.	.	.	1750	.	.	.	.	.	.	.	.	.	1760	.	.
		223	.	.	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		E	V	S	R	G	W	.	V	R	L	R	L	L	N	A	S	N	S	R	R	Y	Q	L	Q	M	N	D	G	R	P	L	H	V	I	S	G	D	Q	G	F	L	P	A	P	V	S	V	K	Q	L	S	L	A	P	G	E	R	R	E	I	L	V	D	M	S	N	G	D	E	V	S	I	T	C	G	E	A	A	S	I
Query Conservation								.
Alig confidence								.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	M	Y	E	Q	E	W	V	R	L	H	L	L	N	L	G	G	S	R	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T													T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1778	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	R	I	R	G	F	F	E	P	S	S	I	L	V	S	T	L	V	L	T	L	R	P	T	G	L	L	P	L	V	T	D	S	L	P	M	R	L	L	P	T	E	I	M	A	G	S	P	I	R	S	R	D	I	S	L	G	D	D	P	G	I	N	G	Q	L	W	D	V	N	R	I	D	V	T	A	Q	Q	G
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	E	R	W	T	V	R	A	D	E	P	Q	A	F	H	I	E	G	V	M	F	Q	I	R	N	V	N	G	A	M	P	F	P	E	D	R	G	W	K	D	T	V	W	V	D	G	Q	V	E	L	L	V	Y	F	G	Q	P	S	W	A	H	F	P	F	Y	F	N	S	Q	T	L	E	M	A	D	R	G	S	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																									.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																									.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	H	V	V	H	F	H	G	Q	T	L	L	E	N	G	T	Q	Q	H	.	.	.	.	.	.	.	.	Q	L	G	V	W	P	L	L	P	G	S	F	K	T	L	E	M	K	A	S	K	P	G	W	.	.	W	L	L	D	T	E	V	G	E	I	Q	R	A	G	M	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.						T	T							S	S	S			.	.	.	.	.	.	.	.			S	S					T	T											S	S			.	.												T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.																									.	.
Template SS confidence
														1799	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.	.									.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840			.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.
		462	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	L	L	V	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	P	F	L	I	V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1857	.	.	1860	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions