Job Description P26648 Confidence 100.00% Date Thu Jan 5 11:43:06 GMT 2012 Rank 6 Aligned Residues 436 % Identity 25% Template c1of0A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:spore coat protein a; PDBTitle: crystal structure of bacillus subtilis cota after 1h2 soaking with ebs Resolution 2.45 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.					.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.															.																																						.	.
Query SS confidence																								.	.	.	.															.																																						.	.
Query Sequence		S	A	A	G	Q	Q	Q	P	L	P	V	P	P	L	L	E	S	R	R	G	Q	P	.	.	.	.	L	F	M	T	V	Q	R	A	H	W	S	F	T	P	.	G	T	R	A	S	V	W	G	I	N	G	R	Y	L	G	P	T	I	R	V	W	K	G	D	D	V	K	L	I	Y	S	N	R	L	T	E	N	.	.
Query Conservation																								.	.	.	.															.																																						.	.
Alig confidence																								.	.	.	.															.																																						.	.
Template Conservation
Template Sequence		T	L	E	K	F	V	D	A	L	P	I	P	D	T	L	K	P	V	Q	Q	S	K	E	K	T	Y	Y	E	V	T	M	E	E	C	T	H	Q	L	H	R	D	L	P	P	T	R	L	W	G	Y	N	G	L	F	P	G	P	T	I	E	V	K	R	N	E	N	V	Y	V	K	W	M	N	N	L	P	S	T	H	F
Template Known Secondary structure					S	S		S	B						B				S				S	S																S	T	T	S									T	T	B	S	S			B					T	T													S	S		S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
															99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	M	T	V	A	G	L	Q	V	P	G	P	L	M	G	G	.	.	.	.	.	.	.	.	P	A	R	M	M	S	P	N	A	D	W	A	P	V	L	P	I	R	Q	N	A	A	T	L	W	Y	H	A	N	T	P	N	R	T	A	Q	Q	V	Y	N	G	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	I	D	H	T	I	H	E	P	E	V	K	T	V	V	H	L	H	G	G	V	T	P	D	D	S	D	G	Y	P	E	A	W	F	S	K	D	F	E	Q	T	G	P	Y	F	K	R	E	V	Y	H	Y	P	N	Q	Q	R	G	A	I	L	W	Y	H	D	H	A	M	A	L	T	R	L	N	V	Y	A	G	L
Template Known Secondary structure		S				T	T					S			B						T					G	G	G	S			T	T	S		B		G	G	G	S	S	B		T	T				S								S		S										T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.													200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	M	W	L	V	E	D	E	V	S	K	S	L	P	I	P	N	H	Y	G	V	D	D	F	P	V	I	I	Q	D	K	R	L	D	N	F	G	T	P	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	N	E	P	G	S	G	G	F	V	G	D	T	L	L	V	N	G	V	Q	S	P	Y	V	E	V	S
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.
Template Sequence		V	G	A	Y	I	I	H	D	P	K	E	K	R	L	K	L	P	S	D	.	.	E	Y	D	V	P	L	L	I	T	D	R	T	I	N	E	D	G	S	L	F	Y	P	S	A	P	E	N	P	S	P	S	L	P	N	P	S	I	V	P	A	F	C	G	E	T	I	L	V	N	G	K	V	W	P	Y	L	E	V	E
Template Known Secondary structure										G	G	G	G	G	G					G	.	.	G	G											B		T	T	S		B				S	S		S	S			T	T	S		S	S				S					S					T	T			S
Template Predicted Secondary structure																					.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	W	V	R	L	R	L	L	N	A	S	N	S	R	R	Y	Q	L	Q	M	N	D	G	R	P	L	H	V	I	S	G	D	Q	G	F	L	P	A	P	V	S	V	K	Q	L	S	L	A	P	G	E	R	R	E	I	L	V	D	M	S	N	G	D	E	V	S	I	T	C	G	E	A	A	S	I	V	D	R	I
Query Conservation
Alig confidence																																																																										.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		P	R	K	Y	R	F	R	V	I	N	A	S	N	T	R	T	Y	N	L	S	L	D	N	G	G	D	F	I	Q	I	G	S	D	G	G	L	L	P	R	S	V	K	L	N	S	F	S	L	A	P	A	E	R	Y	D	I	I	I	D	F	T	A	Y	E	G	E	S	I	I	L	A	N	.	.	.	S	A	G	C	G
Template Known Secondary structure		S	S											S	S								T	T										T	T										S						T	T										T	T		T	T								.	.	.				S	S
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.							.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.
Query Sequence		R	G	F	F	E	P	S	S	I	L	V	S	T	L	V	L	T	L	R	P	T	G	L	L	P	L	V	T	D	S	L	P	M	R	L	L	P	T	E	I	M	A	G	S	P	I	R	S	R	D	I	S	L	G	D	D	.	.	.	.	.	.	P	G	I	N	G	Q	L	W	D	V	N	R	I	D	V	T	A	Q
Query Conservation																																																										.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.										.
Template Conservation																																																																									.
Template Sequence		G	D	V	N	P	E	T	D	A	N	I	M	Q	F	R	V	T	K	P	L	A	Q	K	D	E	S	R	K	P	K	Y	L	A	S	Y	P	S	V	Q	H	E	R	I	Q	N	I	R	T	L	K	L	A	G	T	Q	D	E	Y	G	R	P	V	L	L	L	N	N	K	R	W	H	.	D	P	V	T	E	T	P	K
Template Known Secondary structure		S				T	T	T	T	T									S			S	S								S	B		S			G	G	G																			T	T	S							T	T	B		T	T	.	S				B			B
Template Predicted Secondary structure																																																																									.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.
		380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410																			.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	G	T	W	E	R	W	T	V	R	A	.	.	D	E	P	Q	A	F	H	I	E	G	V	M	F	Q	I	R	N	V	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	P	F	P	E	D	R	G	W	K	D	T	V	W	V	D	G	Q	V	E	L	L	V	Y	F	G	Q	P
Query Conservation													.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.
Template Conservation																																																																																	.
Template Sequence		V	G	T	T	E	I	W	S	I	I	N	P	T	R	G	T	H	P	I	H	L	H	L	V	S	F	R	V	L	D	R	R	P	F	D	I	A	R	Y	Q	E	S	G	E	L	S	Y	T	G	P	A	V	P	P	P	P	S	E	K	G	W	K	D	T	I	Q	A	H	A	G	E	V	L	R	I	A	A	T	F	.
Template Known Secondary structure		T	T											S	S	S							S	S											B													B	S	S			B				G	G	G	S	S		B	S						T	T										.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	A	H	F	P	F	Y	F	N	S	Q	T	L	E	M	A	D	R	G	S	I	G	Q	L	L	V	N	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	Y	S	G	R	Y	V	W	H	C	H	I	L	E	H	E	D	Y	D	M	M	R	P	M	D	I	T	D
Template Known Secondary structure			S										S						T	T	T								B
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510