Phyre 2 alignment of P26648 with c1aq8B

Job Description P26648
Confidence 100.00% Date Thu Jan 5 11:43:06 GMT 2012

Rank 29 Aligned Residues 298

% Identity 16% Template c1aq8B_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nitrite reductase; PDBTitle: structure of alcaligenes faecalis nitrite reductase reduced2 with ascorbate

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.									.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.																	.
Query SS confidence																						.	.	.	.	.	.	.	.																	.
Query Sequence	A	S	A	A	G	Q	Q	Q	P	L	P	V	P	P	L	L	E	S	R	R	G	.	.	.	.	.	.	.	.	Q	P	L	F	M	T	V	Q	R	A	H	W	S	F	T	P	.	G	T	R	A	S	V	W	G	I	N	G	R	Y	L	G	P	T	I	R	V	W	K	G	D	D	V	K	L	I	Y	S	N	R	L
Query Conservation																						.	.	.	.	.	.	.	.																	.
Alig confidence																						.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence	A	A	L	P	R	Q	K	V	E	L	V	D	P	P	F	V	H	A	H	S	Q	V	A	E	G	G	P	K	V	V	E	F	T	M	V	I	E	E	K	K	I	V	I	D	D	A	G	T	E	V	H	A	M	A	F	N	G	T	V	P	G	P	L	M	V	V	H	Q	D	D	Y	L	E	L	T	L	I	N	P	E
Template Known Secondary structure	T	T	S										T	T	S						S	B		S	S	S																		S	T	T										T	T		S	S								T	T											T
Template Predicted Secondary structure
Template SS confidence
	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.

	96	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence	T	E	.	.	N	V	S	M	T	V	A	G	L	Q	V	P	G	P	L	M	G	G	P	A	R	M	M	S	P	N	A	D	W	A	P	V	L	P	I	R	Q	N	A	A	T	L	W	Y	H	A	N	T	P	N	R	T	A	Q	Q	V	Y	N	G	L	A	G	M	W	L	V	E	D	E	V	S	K	S	L	P	I
Query Conservation			.	.
Alig confidence			.	.														.	.																								.
Template Conservation																		.	.																								.
Template Sequence	T	N	T	L	M	H	N	I	D	F	H	A	A	T	G	A	L	.	.	G	G	G	G	L	T	E	I	N	P	G	E	K	T	I	L	R	F	K	A	T	K	P	.	G	V	F	V	Y	H	C	A	P	P	G	M	V	P	W	H	V	V	S	G	M	N	G	A	I	M	V	L	P	R	E	G	L	H	D	G	K
Template Known Secondary structure	T			S		B					T	T			S	G	G	.	.	G	G	G	G	G			B		T	T											S		.										T	T							T	T	T										T	B					T	T
Template Predicted Secondary structure																		.	.																								.
Template SS confidence
	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

	174	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.													.	.	.	.	210	.	.	.	.	.	.	.	.	.	220						.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure								.																										.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence								.																										.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence	P	N	H	Y	G	V	D	.	D	F	P	V	I	I	Q	D	K	R	L	D	N	F	G	T	P	E	Y	N	E	P	G	S	G	.	.	.	.	.	.	.	.	.	.	.	.	G	F	V	G	D	T	L	L	V	N	G	V	Q	S	P	.	.	.	.	.	Y	V	E	V	S	R	G	W	V	R	L	R	L	L	N
Query Conservation								.																										.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence								.																										.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.									.
Template Conservation																																																																										.
Template Sequence	G	K	A	L	T	Y	D	K	I	Y	Y	V	G	E	Q	D	F	Y	V	P	R	D	E	N	G	K	Y	K	K	Y	E	A	P	G	D	A	Y	E	D	T	V	K	V	M	R	T	L	T	P	T	H	V	V	F	N	G	A	V	G	A	L	T	G	D	K	A	M	T	A	A	V	G	E	.	K	V	L	I	V	H
Template Known Secondary structure	S						S														B		T	T	S		B				S	S	G	G	G	G									T	T	T			S					T	T	B	T	T	T	T	S	G	G	G						T	T		.
Template Predicted Secondary structure																																																																										.
Template SS confidence
	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.

	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																															.																																				.
Query SS confidence																															.																																				.
Query Sequence	A	S	N	S	R	R	Y	Q	L	Q	M	N	D	G	R	P	L	H	V	I	S	G	D	Q	G	F	L	P	A	P	.	V	S	V	K	Q	L	S	L	A	P	G	E	R	R	E	I	L	V	D	M	S	N	G	D	E	V	S	I	T	C	G	E	A	A	S	.	I	V	D	R	I	R	G	F	F	E	P	S	S
Query Conservation																															.																																				.
Alig confidence												.																			.																																				.
Template Conservation												.
Template Sequence	S	Q	A	N	R	D	T	R	P	H	L	.	I	G	G	H	G	D	Y	V	W	A	T	G	K	F	N	T	P	P	D	V	D	Q	E	T	W	F	I	P	G	G	A	A	G	A	A	F	Y	T	F	Q	Q	P	G	I	Y	A	Y	V	N	H	N	L	I	E	A	F	E	L	G	A	A	A	H	F	K	V	T	G
Template Known Secondary structure			S	S	S		B					.		T	S							T	T		B	T	T	S							S	S			B		T	T											S									S	S						T	S	S									S
Template Predicted Secondary structure												.
Template SS confidence
	246	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

	314	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	L	V	S	T	L	V	L	T	L	R	P	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	W	N	D	D	L	M	T	S	V	L	A	P	S
Template Known Secondary structure				T	T	T				S	S		S
Template Predicted Secondary structure
Template SS confidence
	325	.	.	.	.	330	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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