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Job DescriptionP21179
Confidence100.00%DateThu Jan 5 11:38:00 GMT 2012
Rank16Aligned Residues470
% Identity40%Templatec1f4jC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:catalase; PDBTitle: structure of tetragonal crystals of human erythrocyte2 catalase
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   78.80.........90.........100.........110.........120.........130.........140.........150.......
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Query Sequence  YALTTNQGVRIADDQNSLRAGSRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPN
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Template Sequence  DVLTTGAGNPVGDKLNVITVGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAGAFGYFEVTHDITKYSKAKVFEHIG
Template Known Secondary structure 


B
TT

B
S
SSS

BSSTTS
B
TT
TT





SSS
S
S

TTT


GGGSSTT
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   25....30.........40.........50.........60.........70.........80.........90.........100....
 
   158.160.........170.........180.........190.........200.........210.........220.........230.......
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Query Sequence  KITPVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHD
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Template Sequence  KKTPIAVRFSTVAGESGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDPILFPSFIHSQKRNPQTHLK. . . . DPD
Template Known Secondary structure 

SSS
TTS
SSSSS

TTSSS

S
SSGGGSB
TTT
SB....
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   105....110.........120.........130.........140.........150.........160.........170....... ..180
 
   238.240.........250.........260.........270.........280.........290.........300.........310.......
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Query Sequence  TFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDF
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Template Sequence  MVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQGIKNLSVEDAARLSQEDPDY
Template Known Secondary structure 
GGGTSGGGSBSSGGGS


S

TTS
TT


B


TT
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   181........190.........200.........210.........220.........230.........240.........250.........260
 
   318.320.........330.........340.........350.........360.........370.........380.........390.......
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Query Sequence  HRRELWEAIEAGDFPEYELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGHIV
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Template Sequence  GIRDLFNAIATGKYPSWTFYIQVMTFNQAETFPFNPFDLTKVWPHKDYPLIPVGKLVLNRNPVNYFAEVEQIAFDPSNMP
Template Known Secondary structure  TT



T
SS
TT
TT



TTTS



SSTTT



TT


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   261........270.........280.........290.........300.........310.........320.........330.........340
 
   398.400.........410.........420.........430...... ...440.........450........ .460.........470.....
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Query Sequence  PGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRP. TCPYHNFQRDGMHRMGIDTNPA. NYEPNSINDNWPRETPP
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Template Sequence  PGIEASPDKMLQGRLFAYPDTHRHRL. GPNYLHIPVNCPYRARVANYQRDGPMCMQDNQGGAPNYYPNSFGAPEQ. . . . .
Template Known Secondary structure  TT
S
T.
TTGGGSTTTS
TTS



S



TT

S
TTTTS

SSS
SS




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   341........350.........360...... ...370.........380.........390.........400.........410....
 
   476...480.........490.........500.........510.. .......520.........530.........540.........550....
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Query Sequence  GPKRGGFESYQERVEGNKVRERSPSFGEYYSHPRLFW. LSQTPFEQRHIVDGFSFELSKVVRPYIRERVVDQLAHIDLTL
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Template Sequence  . . . QPSALEHSIQYSGEVRRF. NTANDDNVTQVRAFYVNVLNEEQRKRLCENIAGHLKDA. QIFIQKKAVKNFTEVHPDY
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GGG







S
SS

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TTS
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   415....420.........430.. .......440.........450.........460.........470 .........480.........
 
   555....560..
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Query Sequence  AQAVAKNL
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Template Sequence  GSHIQALL
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   490.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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