Job Description P0A800 Confidence 100.00% Date Thu Jan 5 11:06:32 GMT 2012 Rank 1 Aligned Residues 90 % Identity 100% Template c3iydE_ PDB info PDB header:transcription/dna Chain: E: PDB Molecule:dna-directed rna polymerase subunit omega; PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex Resolution 19.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	V	T	V	Q	D	A	V	E	K	I	G	N	R	F	D	L	V	L	V	A	A	R	R	A	R	Q	M	Q	V	G	G	K	D	P	L	V	P	E	E	N	D	K	T	T	V	I	A	L	R	E	I	E	E	G	L	I	N	N	Q	I	L	D	V	R	E	R	Q	E	Q	Q	E	Q	E	A	A	E	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	V	T	V	Q	D	A	V	E	K	I	G	N	R	F	D	L	V	L	V	A	A	R	R	A	R	Q	M	Q	V	G	G	K	D	P	L	V	P	E	E	N	D	K	T	T	V	I	A	L	R	E	I	E	E	G	L	I	N	N	Q	I	L	D	V	R	E	R	Q	E	Q	Q	E	Q	E	A	A	E	L	Q
Template Known Secondary structure				S	S	S	S	S					S	S		S							T	T	T	T							T		S	T	T			S		T	T	S						B	T	T	B							S	S		T	T	S			S	S				S	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	T	A	I	A	E	G	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	T	A	I	A	E	G	R	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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