Job Description P0A850 Confidence 100.00% Date Thu Jan 5 11:06:54 GMT 2012 Rank 3 Aligned Residues 404 % Identity 20% Template c3gtyX_ PDB info PDB header:chaperone/ribosomal protein Chain: X: PDB Molecule:trigger factor; PDBTitle: promiscuous substrate recognition in folding and assembly activities2 of the trigger factor chaperone Resolution 3.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	V	S	V	E	T	T	Q	G	L	G	R	R	V	T	I	T	I	A	A	D	S	I	E	T	A	V	K	S	E	L	V	N	V	A	K	K	V	R	I	D	G	F	R	K	G	K	V	P	M	N	I	V	A	Q	R	Y	G	A	S	V	R	Q	D	V	L	G	D	L	M	S	R	N	F	I	D	A	I	I
Query Conservation
Alig confidence																																													.	.																			.
Template Conservation																																													.	.																			.
Template Sequence		M	E	V	K	E	L	E	R	D	K	N	R	V	V	L	E	Y	V	F	G	A	E	E	I	A	Q	A	E	D	K	A	V	R	Y	L	N	Q	R	V	E	I	P	G	.	.	K	G	R	I	P	K	N	V	L	K	M	K	L	G	E	E	F	Q	.	E	Y	T	L	D	F	L	M	D	L	I	P	D	T	L	K
Template Known Secondary structure											T	T										T	T															T	S						.	.						S					T	T	S	T	T				.									T	T	S	T	T	T	S	S
Template Predicted Secondary structure																																													.	.																			.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		K	E	K	I	N	P	A	G	A	P	T	Y	V	P	G	E	Y	K	L	G	E	D	F	T	Y	S	V	E	F	E	V	Y	P	E	V	E	L	Q	G	L	E	A	I	E	V	E	K	.	P	I	V	E	V	T	D	A	D	V	D	G	M	L	D	T	L	R	K	Q	Q	A	T	W	K	E	K	D	G	A	V	E
Query Conservation																																																	.
Alig confidence						.	.												.																														.
Template Conservation						.	.												.
Template Sequence		D	R	K	L	.	.	I	L	S	P	I	V	T	E	R	E	L	.	K	D	V	T	A	R	V	V	V	E	V	H	E	E	P	E	V	R	I	G	D	I	S	K	I	E	V	E	K	V	D	E	E	K	V	L	E	K	Y	V	E	R	R	I	E	D	L	R	E	S	H	A	L	L	E	P	K	E	G	P	A	E
Template Known Secondary structure		S	S		B	.	.	S	S										.		S	S										B									G	G	G	S																										T								S
Template Predicted Secondary structure						.	.												.
Template SS confidence
		80	.	.	.			.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	R	V	T	I	D	F	T	G	S	V	D	G	E	E	F	E	G	G	K	A	S	D	F	V	L	A	M	G	Q	G	R	M	I	P	G	F	E	D	G	I	K	G	H	K	A	G	E	E	F	T	I	D	V	T	F	P	E	E	Y	H	A	E	N	L	K	G	K	A	A	K	F	A	I	N	L	K	K
Query Conservation
Alig confidence																	.	.																					.																					.	.	.	.	.	.	.	.	.
Template Conservation																	.	.																					.																					.	.	.	.	.	.	.	.	.
Template Sequence		A	G	D	L	V	R	V	N	M	E	V	Y	N	E	E	.	.	G	K	K	L	T	S	R	E	Y	E	Y	V	I	S	E	D	E	D	R	P	.	F	V	K	D	L	V	G	K	K	K	G	D	V	V	E	I	E	R	E	Y	.	.	.	.	.	.	.	.	.	E	G	K	K	Y	T	Y	K	L	E	V	E	E
Template Known Secondary structure		T	T	S											T	T	.	.	S														S	S				T	.	T					T	T			T	T										.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																	.	.																					.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.										.	.	.	.	.	.	.	.	220	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	E	R	E	L	P	E	L	T	A	E	F	I	K	R	F	G	V	E	D	G	S	V	E	G	L	R	A	E	V	R	K	N	M	E	R	E	L	K	S	A	I	R	N	R	V	K	S	Q	A	I	E	G	L	V	K	A	N	D	I	D	V	P	A	A	L	I	D	S	E	I	D	V	L	R	R	Q	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Y	K	R	T	L	P	E	I	G	D	E	L	A	K	S	V	N	N	E	F	E	T	L	E	Q	L	K	E	S	L	K	K	E	G	K	E	I	Y	D	V	E	M	K	E	S	M	R	E	Q	L	L	E	K	L	P	E	I	V	E	I	E	I	S	D	R	T	L	E	I	L	V	N	E	A	I	N	R	L	K
Template Known Secondary structure										S	S						T	T		S	S			S																															T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.		390	.	.	.	.
Predicted Secondary structure									.	.	.	.																																																																.
Query SS confidence									.	.	.	.																																																																.
Query Sequence		Q	R	F	G	G	N	E	.	.	.	.	K	Q	A	L	E	L	P	R	E	L	F	E	E	Q	A	K	R	R	V	V	V	G	L	L	L	G	E	V	I	R	T	N	E	L	K	A	D	E	E	R	V	K	G	L	I	E	E	M	A	S	A	Y	E	D	P	K	E	V	I	E	F	Y	S	.	K	N	K	E	L
Query Conservation									.	.	.	.																																																																.
Alig confidence									.	.	.	.																																																																.
Template Conservation
Template Sequence		R	E	G	R	Y	E	Q	I	V	S	S	Y	E	S	E	E	K	F	R	E	E	L	K	E	R	I	L	D	D	I	K	R	D	R	V	I	E	V	L	A	Q	E	K	G	I	S	V	N	D	E	E	L	E	K	E	A	E	E	L	A	P	F	W	G	I	S	P	D	R	A	K	S	L	V	K	A	R	Q	D	L
Template Known Secondary structure		T	T	T							T	T	S	S																														T	T													T	T	S	T	T	T	T	T	S													S	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	N	M	R	N	V	A	L	E	E	Q	A	V	E	A	V	L	A	K	A	K	V	T	E	K	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E	E	L	R	W	A	I	L	K	R	K	V	L	D	L	L	L	Q	E	V	K	V	K	V	V	E	P
Template Known Secondary structure																			T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.