Job Description P0A850 Confidence 79.74% Date Thu Jan 5 11:06:54 GMT 2012 Rank 67 Aligned Residues 102 % Identity 17% Template c3bmbB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; PDBTitle: crystal structure of a new rna polymerase interacting2 protein Resolution 1.91 Å

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		126	.	.	.	130	.	.	.	.	.	.	.	.	.															140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	P	I	V	E	V	T	D	A	D	V	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	D	T	L	R	K	Q	Q	A	T	W	K	E	K	D	G	A	V	E	A	E	D	R	V	T	I	D	F	T	G	S	V	D	G	E	E	F	E	G	G	K	A	S	D	F	V	L	A	M	G	Q
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation																																																															.	.
Template Sequence		S	R	P	T	I	I	I	N	D	L	D	A	E	R	I	D	I	L	L	E	Q	P	A	Y	A	G	L	P	I	A	D	A	L	N	A	E	L	D	R	A	Q	M	C	S	P	E	E	M	P	H	D	V	V	T	M	N	S	R	V	K	F	.	.	R	N	L	S	D	G	E	V	R	V	R	T	L	V	Y	P	A
Template Known Secondary structure																					T	S	G	G	G	T	T													T						G	G	G			T	T	B			T	T						.	.			T	T	T											G	G
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		192	.	.	.	.	.									.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure								.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.
Query Sequence		G	R	M	I	P	G	.	.	.	.	.	.	.	.	F	E	D	G	I	K	G	H	K	A	G	E	E	F	T	I	D	V	T	F	P	E	E	Y	H	A	E	N	L	K	G	K	A	A	K	F	A	I	N	L	K	K	V	E
Query Conservation								.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	M	T	D	S	N	T	Q	L	S	V	M	A	P	V	G	A	A	L	L	G	L	R	V	G	D	S	I	H	W	E	L	P	G	G	V	A	.	.	.	.	.	.	.	.	.	.	.	.	T	H	L	E	V	L	E	L	E
Template Known Secondary structure		G				T	T	T				T	T	S							T	T		B	T	T								T	T	T			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.													.	.	.	120	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions