Job Description P0A850 Confidence 90.76% Date Thu Jan 5 11:06:54 GMT 2012 Rank 63 Aligned Residues 91 % Identity 14% Template c2p4vA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor greb; PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution Resolution 2.60 Å

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		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.
Query Sequence		A	D	V	D	G	M	L	D	T	L	R	K	Q	Q	A	T	W	K	E	K	D	G	A	V	E	A	E	D	R	V	T	I	D	F	T	G	S	V	D	G	E	E	F	E	G	G	K	A	S	D	F	V	L	.	.	.	.	.	.	.	.	A	M	G	Q	G	R	M	I	P	G	F	E	D	G	I	K	G	H	K
Query Conservation																																																							.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.											.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.
Template Sequence		R	E	I	D	R	R	V	R	Y	L	T	K	C	M	E	N	L	K	I	V	D	Y	S	P	Q	Q	E	G	K	V	F	F	G	A	W	V	E	I	E	N	.	.	.	D	D	G	V	T	H	R	F	R	I	V	G	Y	D	E	I	F	G	R	K	D	Y	I	S	I	D	S	P	M	A	R	A	L	L	K	K	E
Template Known Secondary structure																									S	S	S		S	S		S	S	S								.	.	.	T	T								B			S	T	T			S	S	S			B		T	T	S						S	T	T
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	E	E	F	T	I	D	V	T	F	P	E	E	Y	H	A	E	N	L	K	G	K	A	A	K	F	A	I	N	L	K	K	V	E
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	G	D	L	A	V	V	N	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	A	S	W	Y	V	N	A	I	E
Template Known Secondary structure		T	T								S	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.														.	.	.	.	.	.	.	150	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions