Job Description P0A850 Confidence 100.00% Date Thu Jan 5 11:06:54 GMT 2012 Rank 1 Aligned Residues 432 % Identity 97% Template c1w26B_ PDB info PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins Resolution 2.7 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	V	S	V	E	T	T	Q	G	L	G	R	R	V	T	I	T	I	A	A	D	S	I	E	T	A	V	K	S	E	L	V	N	V	A	K	K	V	R	I	D	G	F	R	K	G	K	V	P	M	N	I	V	A	Q	R	Y	G	A	S	V	R	Q	D	V	L	G	D	L	M	S	R	N	F	I	D	A	I	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	Q	V	S	V	E	T	T	Q	G	L	G	R	R	V	T	I	T	I	A	A	D	S	I	E	T	A	V	K	S	E	L	V	N	V	A	K	K	V	R	I	D	G	F	R	K	G	K	V	P	X	N	I	V	A	Q	R	Y	G	A	S	V	R	Q	D	V	L	G	D	L	X	S	R	N	F	I	D	A	I	I
Template Known Secondary structure			B							T	T	T																									T	T	S				S	S								T	T			S	S	S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	K	I	N	P	A	G	A	P	T	Y	V	P	G	E	Y	K	L	G	E	D	F	T	Y	S	V	E	F	E	V	Y	P	E	V	E	L	Q	G	L	E	A	I	E	V	E	K	P	I	V	E	V	T	D	A	D	V	D	G	M	L	D	T	L	R	K	Q	Q	A	T	W	K	E	K	D	G	A	V	E	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	K	I	N	P	A	G	A	P	T	Y	V	P	G	E	Y	K	L	G	E	D	F	T	Y	S	V	E	F	E	V	Y	P	E	V	E	L	Q	G	L	E	A	I	E	V	E	K	P	I	V	E	V	T	D	A	D	V	D	G	X	L	D	T	L	R	K	Q	Q	A	T	W	K	E	K	D	G	A	V	E	A
Template Known Secondary structure				T			B		S											T	T	S										B								S		T	T																									T	T								S	S			T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	R	V	T	I	D	F	T	G	S	V	D	G	E	E	F	E	G	G	K	A	S	D	F	V	L	A	M	G	Q	G	R	M	I	P	G	F	E	D	G	I	K	G	H	K	A	G	E	E	F	T	I	D	V	T	F	P	E	E	Y	H	A	E	N	L	K	G	K	A	A	K	F	A	I	N	L	K	K	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	D	R	V	T	I	D	F	T	G	S	V	D	G	E	E	F	E	G	G	K	A	S	D	F	V	L	A	X	G	Q	G	R	X	I	P	G	F	E	D	G	I	K	G	H	K	A	G	E	E	F	T	I	D	V	T	F	P	E	E	Y	H	A	E	N	L	K	G	K	A	A	K	F	A	I	N	L	K	K	V
Template Known Secondary structure		T											B	T	T	B			T	T										S	S	S			S		T	T						T	T			T	T											T	T		S		T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	R	E	L	P	E	L	T	A	E	F	I	K	R	F	G	V	E	D	G	S	V	E	G	L	R	A	E	V	R	K	N	M	E	R	E	L	K	S	A	I	R	N	R	V	K	S	Q	A	I	E	G	L	V	K	A	N	D	I	D	V	P	A	A	L	I	D	S	E	I	D	V	L	R	R	Q	A	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	R	E	L	P	E	L	T	A	E	F	I	K	R	F	G	V	E	D	G	S	V	E	G	L	R	A	E	V	R	K	N	X	E	R	E	L	K	S	A	I	R	N	R	V	K	S	Q	A	I	E	G	L	V	K	A	N	D	I	D	V	P	A	A	L	I	D	S	E	I	D	V	L	R	R	Q	A	A	Q
Template Known Secondary structure															G	G	G	T		T	T																																					T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	G	G	N	E	K	Q	A	L	E	L	P	R	E	L	F	E	E	Q	A	K	R	R	V	V	V	G	L	L	L	G	E	V	I	R	T	N	E	L	K	A	D	E	E	R	V	K	G	L	I	E	E	M	A	S	A	Y	E	D	P	K	E	V	I	E	F	Y	S	K	N	K	E	L	M	D	N	M	R	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	G	G	N	E	K	Q	A	L	E	L	P	R	E	L	F	E	E	Q	A	K	R	R	V	V	V	G	L	L	L	G	E	V	I	R	T	N	E	L	K	A	D	E	E	R	V	K	G	L	I	E	E	X	A	S	A	Y	E	D	P	K	E	V	I	E	F	Y	S	K	N	K	E	L	X	D	N	X	R	N
Template Known Secondary structure		T	S	S			T	T					S		G	G	G	T																					T	T																	T	T	S	S											T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	L	E	E	Q	A	V	E	A	V	L	A	K	A	K	V	T	E	K	E	T	T	F	N	E	L	M	N	Q	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	L	E	E	Q	A	V	E	A	V	L	A	K	A	K	V	T	E	K	E	T	T	F	N	E	L	X	N	Q	Q	A
Template Known Secondary structure														T	T	S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.