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Job DescriptionP24242
Confidence100.00%DateWed Jan 25 15:20:45 GMT 2012
Rank20Aligned Residues269
% Identity25%Templated1jyea_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution1.70

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   61........70.........80.........90......... 100.........110.........120.........130.........
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Query Sequence  TLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG. KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA
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Template Sequence  LIGVAT. . SSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAAC
Template Known Secondary structure  ..S
TTSTT


SSSTTT
S
S


T
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   63..... .70.........80.........90.........100.........110.........120.........130.........140
 
   140.........150.........160.........170.........180.........190.........200.........210.........
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Query Sequence  HSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIAN
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Template Sequence  TNVPALFLDV. SDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPI. . AERE
Template Known Secondary structure  TTS
SSS.
TTSSS

T

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TTSTT


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   141........150 .........160.........170.........180.........190.........200.........210... ....
 
   220.........230.........240.........250.........260.........270.........280.........290.........
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Query Sequence  GKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKIPVTEMI
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Template Sequence  GDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLG
Template Known Secondary structure 

SSTT


SSSTT

BTTTB
SB

GGGGGSSS

B

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   218.220.........230.........240.........250.........260.........270.........280.........290.......
 
   300.........310.........320.........330....
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Query Sequence  QEIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIAP
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Template Sequence  QTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAP
Template Known Secondary structure  TT
S
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SS



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   298.300.........310.........320.........330..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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