Job Description P24242 Confidence 99.96% Date Wed Jan 25 15:20:45 GMT 2012 Rank 58 Aligned Residues 269 % Identity 18% Template d1gcaa_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.70

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.
Predicted Secondary structure																																			.																																								.
Query SS confidence																																			.																																								.
Query Sequence		S	T	Q	T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L	F	H	A	A	R	M	A	E	E	K	.	G	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	M	I	Y	P	R	F	L	S	.	V	D	E	I	D	D
Query Conservation																																			.																																								.
Alig confidence											.	.																							.																																								.
Template Conservation											.	.
Template Sequence		A	D	T	R	I	G	V	T	I	.	.	Y	K	Y	D	D	N	F	M	S	V	V	R	K	A	I	E	K	D	G	K	S	A	P	D	V	Q	L	L	M	N	D	S	Q	N	D	Q	S	K	Q	N	D	Q	I	D	V	L	L	A	K	G	V	K	A	L	A	I	N	L	V	D	P	A	A	A	G	T	V	I	E
Template Known Secondary structure											.	.	S		T	T																	T	S	T	T									T	T															T	T		S							S	S	G	G	G
Template Predicted Secondary structure											.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.			10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.							.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180													.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	D	A	H	S	Q	P	I	M	V	L	N	R	R	L	R	.	.	.	.	.	.	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	E	I	A	F	L	T	G	S	M	D	S	P	T	S	I	E	R
Query Conservation																			.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	R	G	Q	N	V	P	V	V	F	F	N	K	E	P	S	R	K	A	L	D	S	Y	D	K	A	Y	Y	V	G	T	D	S	K	E	S	G	V	I	Q	G	D	L	I	A	K	H	W	Q	A	N	Q	G	W	D	L	N	K	D	G	K	I	Q	Y	V	L	L	K	G	E	P	G	H	P	D	A	E	A	R
Template Known Secondary structure						T	T							S	S									T		T	T																											G	G	G		T	T		S	S	S									S	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		L	A	G	Y	K	D	A	L	A	Q	H	G	I	A	L	N	E	K	L	I	A	N	G	K	W	T	P	A	S	G	A	E	G	V	E	M	L	L	E	R	G	A	.	.	K	F	S	A	L	V	A	S	N	D	D	M	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F
Query Conservation																																												.	.
Alig confidence																																												.	.																									.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		T	T	Y	V	V	K	E	L	N	D	K	G	I	Q	T	E	Q	L	A	L	D	T	A	M	W	D	T	A	Q	A	K	D	K	M	D	A	W	L	S	G	P	N	A	N	K	I	E	V	V	I	A	N	N	D	A	M	A	M	G	A	V	E	A	L	K	A	H	N	.	.	.	K	S	S	I	P	V	F	G	V
Template Known Secondary structure												T	T												T	T														T	S	T	T	G	G	G							S	S														T	T	.	.	.		T	T	S					S
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.				.	.	.	230	.	.	.	.	.
		276	.	.	.	280	.	.	.	.				.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.										.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure											.	.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		D	D	I	A	I	A	P	Y	T	.	.	.	V	P	A	L	S	S	V	K	I	P	V	T	E	M	I	Q	E	I	I	G	R	L	I	F	M	L	D	G	G	D	F	S	P	P	.	.	.	.	.	.	.	.	.	K	T	F	S	G	K	L	I	R	R	D	S	L
Query Conservation											.	.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	L	P	E	A	L	A	L	V	K	S	G	A	M	A	G	T	V	L	N	D	A	N	N	Q	A	K	A	T	F	D	L	A	K	N	L	A	E	G	K	G	A	A	D	G	T	S	W	K	I	E	N	K	I	V	R	V	P	Y	V	G	V	D	K	D	N	L
Template Known Secondary structure		B												T	S	S		B																						T	T	S		T	T	T	T	S					B	T	T											T	T	T	G
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions