Job Description P24242 Confidence 95.50% Date Wed Jan 25 15:20:45 GMT 2012 Rank 129 Aligned Residues 213 % Identity 13% Template d1ewka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.																		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Query Sequence		T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	L	L	F	H	A	A	R	M	A	E	E	K	G	.	.	.	.	.	.	.	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	G	A	L	F	S	V	H	H	Q	P	P	A	E	K	V	P	E	R	K	C	G	E	I	R	E	Q	Y	G	I	Q	R	V	E	A	M	F	H	T	L	D	K	I	N	A	D	P	V	L	L	P	N	I	T	L	G	S	E	I	R	D	S	C	W	H	S	S	V	A	L	E	Q	S	I	E	F	I	R	K
Template Known Secondary structure									S	B					T	T	T	G	G	G	T					B		T	T	T	T																		S	S	S	S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.								.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.
Query Sequence		R	C	D	A	I	M	I	Y	P	R	F	L	S	V	D	E	I	D	D	I	I	D	A	H	S	Q	P	I	M	V	.	.	.	.	.	.	.	L	N	R	R	L	R	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	E	I	A	F	L	T	G	S	M
Query Conservation																																.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.																																									.	.
Template Conservation																																																																															.	.
Template Sequence		P	I	A	G	V	I	G	P	G	S	S	S	V	A	I	Q	V	Q	N	L	L	Q	L	F	D	I	P	Q	I	A	Y	S	A	T	S	I	D	L	S	D	K	T	L	Y	K	Y	F	L	R	V	V	P	S	D	T	L	Q	A	R	A	M	L	D	I	V	K	R	Y	N	W	T	Y	V	S	A	V	H	.	.	T
Template Known Secondary structure										S	S												G	G	G	T						S	S				G	G	G	G		T	T	T		T	T				S	S																	T	T									.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.			.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A	L	N	E	K	L	I	A	N	G	K	W	T	P	A	S	G	A	E	G	V	E	M	L	L	E	R	G	A	K	F	S	A	L	V	A	S	N	D	D	M	.	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E
Query Conservation																																																																.
Alig confidence																																																																.														.	.
Template Conservation																																																																														.	.
Template Sequence		E	G	N	Y	G	E	S	G	M	D	A	F	K	E	L	A	A	Q	E	G	L	C	I	A	H	S	D	K	I	Y	S	N	A	G	E	K	S	F	D	R	L	L	R	K	L	R	E	R	L	P	K	A	R	V	V	V	C	F	C	E	G	M	T	V	R	G	L	L	S	A	M	R	R	L	G	V	.	.	V	G
Template Known Secondary structure		S	S																		T											T	T															T	T	T	T	T																								T		.	.		S
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310
		269	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	S	V	I	G	F	D	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	F	S	L	I	G	S	D	G
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions