Job Description P24242 Confidence 90.33% Date Wed Jan 25 15:20:45 GMT 2012 Rank 363 Aligned Residues 213 % Identity 8% Template c3om1A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2); PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution Resolution 1.68 Å

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		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.								.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.														.
Query SS confidence																																				.	.	.	.	.	.	.														.
Query Sequence		S	T	Q	T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L	F	H	A	A	R	M	A	E	E	K	G	.	.	.	.	.	.	.	R	Q	L	L	L	A	D	G	K	H	S	A	E	.	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	M	I	Y	P	R	F	L	S
Query Conservation																																				.	.	.	.	.	.	.														.
Alig confidence																																				.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		S	S	L	R	M	A	A	I	L	D	D	Q	T	V	C	G	R	G	E	R	L	A	L	A	L	A	R	E	Q	I	N	G	I	I	E	V	P	A	K	A	R	V	E	V	D	I	F	E	L	Q	R	D	S	Q	Y	E	T	T	D	T	M	C	Q	I	L	P	K	G	V	V	S	V	L	G	P	S	S	S	P	A
Template Known Secondary structure												S		S	S	S	S																	S			S	S													S	S														G	G	G			S						S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.							.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure						.																				.	.	.	.	.	.
Query SS confidence						.																				.	.	.	.	.	.
Query Sequence		V	D	E	I	.	D	D	I	I	D	A	H	S	Q	P	I	M	V	L	N	R	R	L	R	.	.	.	.	.	.	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	E	I	A	F	L	T	G	S	M	D	S	P	T	S	I	E	R	L	A	G	Y	K
Query Conservation						.																				.	.	.	.	.	.
Alig confidence						.																				.	.	.	.	.	.																																			.	.
Template Conservation																																																																		.	.
Template Sequence		S	A	S	T	V	S	H	I	C	G	E	K	E	I	P	H	I	K	V	G	P	E	E	T	P	R	L	Q	Y	L	R	F	A	S	V	S	L	Y	P	S	N	E	D	V	S	L	A	V	S	R	I	L	K	S	F	N	Y	P	S	A	S	L	I	C	.	.	A	K	A	E	C	L	L	R	L	E	E	L	V	R
Template Known Secondary structure														T							S				S	S			G	G	G	G	G	G					S																	T	T	S								.	.	S	S	T	T					T
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.	.	.	.	.	.	160
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	L	A	Q	H	G	I	A	L	N	E	K	L	I	A	N	G	K	W	T	P	A	S	G	A	E	G	V	E	M	L	L	E	R	G	A	K	F	S	A	L	V	A	S	N	D	D	M	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A
Query Conservation
Alig confidence										.	.	.	.	.	.																										.
Template Conservation										.	.	.	.	.	.																										.
Template Sequence		G	F	L	I	S	K	E	T	.	.	.	.	.	.	L	S	V	R	M	L	D	D	R	D	P	T	P	L	L	K	E	I	R	D	D	K	V	S	T	.	I	I	I	D	A	N	A	S	I	S	H	L	V	L	R	K	A	S	E	L	G	M	T	S	A	F	Y	K	Y	I	L	T	T	M	D	F	P
Template Known Secondary structure						S	S	S		.	.	.	.	.	.																						T				.					S															T	T	T	T	S	T	T								T	T	G	G
Template Predicted Secondary structure										.	.	.	.	.	.																										.
Template SS confidence
		161	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions