Job Description P24242 Confidence 99.97% Date Wed Jan 25 15:20:45 GMT 2012 Rank 51 Aligned Residues 263 % Identity 19% Template c3ksmA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component; PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis Resolution 1.90 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.
Predicted Secondary structure																																									.	.																			.														.
Query SS confidence																																									.	.																			.														.
Query Sequence		T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L	F	H	A	A	R	M	A	E	E	K	G	R	Q	L	L	L	A	D	G	.	.	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	.	C	D	A	I	M	I	Y	P	R	F	L	S	V	.	D	E	I	D	D	I
Query Conservation																																									.	.																			.														.
Alig confidence								.	.																																.	.																			.														.
Template Conservation								.	.
Template Sequence		K	L	L	L	V	L	.	.	K	G	D	S	N	A	Y	W	R	Q	V	Y	L	G	A	Q	K	A	A	D	E	A	G	V	T	L	L	H	R	S	T	K	D	D	G	D	I	A	G	Q	I	Q	I	L	S	Y	H	L	S	Q	A	P	P	D	A	L	I	L	A	P	N	S	A	E	D	L	T	P	S	V	A	Q
Template Known Secondary structure								.	.	S		S	S	S	T																	T									S	S	T	T																S			S							S	S	T	T	T	T
Template Predicted Secondary structure								.	.
Template SS confidence
		40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		137	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure														.																														.	.	.	.
Query SS confidence														.																														.	.	.	.
Query Sequence		I	D	A	H	S	Q	P	I	M	V	L	N	.	R	R	L	R	K	N	S	S	H	S	V	W	C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	.	.	.	.	G	H	Q	E	I	A	F	L	T	G	S	M	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A
Query Conservation														.																														.	.	.	.
Alig confidence														.																														.	.	.	.																																	.
Template Conservation																																																																																.
Template Sequence		Y	R	A	R	N	I	P	V	L	V	V	D	S	D	L	A	G	D	A	H	Q	G	L	V	A	T	D	N	Y	A	A	G	Q	L	A	A	R	A	L	L	A	T	L	D	L	S	K	E	R	N	I	A	L	L	R	L	R	A	G	N	A	S	T	D	Q	R	E	Q	G	F	L	D	V	L	R	K	H	D	.	K
Template Known Secondary structure					T	T							S	S			S	S	S		S	S																						S		T	T	S								B			T	T																T	T		T	.	T
Template Predicted Secondary structure																																																																																.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		L	N	E	K	L	I	A	N	G	K	W	T	P	A	S	G	A	E	G	V	E	M	L	L	E	R	G	A	K	F	S	A	L	V	A	S	N	D	D	M	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	I	A	P	Y	T	V	P	A	.	.	.	L
Query Conservation																																																																														.	.	.
Alig confidence																																																						.	.																							.	.	.
Template Conservation																																																						.	.
Template Sequence		I	R	I	I	A	A	P	Y	A	G	D	D	R	G	A	A	R	S	E	X	L	R	L	L	K	E	T	P	T	I	D	G	L	F	T	P	N	E	S	T	T	I	G	A	L	V	A	I	R	Q	S	G	.	.	X	S	K	Q	F	G	F	I	G	F	D	Q	T	E	E	L	E	A	A	X	Y	A	G	E	I	S
Template Known Secondary structure									B			S	S																S									S														T	T	.	.		T	T	S	S						S											T	T	S	S	S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	V	K	I	P	V	T	E	M	I	Q	E	I	I	G	R	L	I	F	M	L	D	G	G	D	F	S	P	P	K	T	F	S	G	K	L	I	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	V	V	Q	N	P	E	Y	X	G	Y	L	A	V	Q	R	A	L	D	L	V	R	G	K	P	I	P	A	F	T	D	T	G	V	R	L	L	Q	E
Template Known Secondary structure																								T	T					S									S
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions