Job Description P24242 Confidence 100.00% Date Wed Jan 25 15:20:45 GMT 2012 Rank 2 Aligned Residues 330 % Identity 23% Template c3kjxD_ PDB info PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator, laci family; PDBTitle: crystal structure of a transcriptional regulator, lacl2 family protein from silicibacter pomeroyi Resolution 2.33 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	T	M	L	E	V	A	K	R	A	G	V	S	K	A	T	V	S	R	V	L	S	G	N	G	Y	V	S	Q	E	T	K	D	R	V	F	Q	A	V	E	E	S	G	Y	R	P	N	L	L	A	R	N	L	S	A	K	S	T	Q	T	L	G	L	V	V	T	N	T	L	Y	H	G	I	Y	F	S	E	L	L
Query Conservation
Alig confidence																																																																				.	.
Template Conservation																																																																				.	.
Template Sequence		P	L	T	L	R	D	V	S	E	A	S	G	V	S	E	X	T	V	S	R	V	L	R	N	R	G	D	V	S	D	A	T	R	A	R	V	L	A	A	A	K	E	L	G	Y	V	P	N	K	I	A	G	A	L	A	S	N	R	V	N	L	V	A	V	I	I	.	.	P	S	L	S	N	X	V	F	P	E	V	L
Template Known Secondary structure					T									S									T	T			S				T	T	T	S											T										T	T	S	S			S							.	.	S		S	S	S	S	S
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	A	A	R	M	A	E	E	K	G	R	Q	L	L	L	A	D	G	K	H	S	A	E	E	E	R	Q	A	I	Q	Y	L	L	D	L	R	C	D	A	I	M	I	Y	P	R	F	L	S	V	D	E	I	D	D	I	I	D	A	H	S	Q	P	I	M	V	L	N	R	R	L	R	K	N	S	S	H	S	V	W
Query Conservation
Alig confidence																																																			.
Template Conservation																																																			.
Template Sequence		T	G	I	N	Q	V	L	E	D	T	E	L	Q	P	V	V	G	V	T	D	Y	L	P	E	K	E	E	K	V	L	Y	E	X	L	S	W	R	P	S	G	V	I	I	A	G	L	E	H	S	.	E	A	A	R	A	X	L	D	A	A	G	I	P	V	V	E	I	X	D	S	D	G	K	P	V	D	A	X	V	G
Template Known Secondary structure									T	T	S	S									T	T														T	T			S							S				.	S								T		S	S									S	S			S	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		C	D	H	K	Q	T	S	F	N	A	V	A	E	L	I	N	A	G	H	Q	E	I	A	F	L	T	G	S	.	M	D	S	P	T	S	I	E	R	L	A	G	Y	K	D	A	L	A	Q	H	G	I	A	L	N	E	K	L	I	A	N	G	K	W	T	P	A	S	G	A	E	G	V	E	M	L	L	E	R	G	A
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		I	S	H	R	R	A	G	R	E	X	A	Q	A	I	L	K	A	G	Y	R	R	I	G	F	X	G	T	K	X	P	L	D	Y	R	A	R	K	R	F	E	G	F	T	E	V	L	G	K	N	G	V	E	I	E	D	R	E	F	Y	S	G	G	S	A	L	A	K	G	R	E	X	T	Q	A	X	L	E	R	S	P
Template Known Secondary structure																		T	T			S						S	S	T	T	T																		T	T				S							S																			T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		K	F	S	A	L	V	A	S	N	D	D	M	A	I	G	A	M	K	A	L	H	E	R	G	V	A	V	P	E	Q	V	S	V	I	G	F	D	D	I	A	I	A	P	Y	T	V	P	A	L	S	S	V	K	I	P	V	T	E	M	I	Q	E	I	I	G	R	L	I	F	M	L	D	G	G	.	.	D	F	S	P
Query Conservation																																																																												.	.
Alig confidence																																																																												.	.
Template Conservation
Template Sequence		D	L	D	F	L	Y	Y	S	N	D	X	I	A	A	G	G	L	L	Y	L	L	E	Q	G	I	D	I	P	G	Q	I	G	L	A	G	F	N	N	V	E	L	L	Q	G	L	P	R	K	L	A	T	X	D	A	C	R	L	E	I	G	R	K	A	A	E	I	I	A	K	R	L	E	D	P	E	A	E	I	E	T
Template Known Secondary structure		T							S	S														T	T			T	T	T	T						S	B			G	G	G	G	G	S	S	S			B			B																					G	G	G
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	T	F	S	G	K	L	I	R	R	D	S	L	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	T	L	E	P	K	I	S	Y	G	D	T	L	K	R
Template Known Secondary structure													S	S	S
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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